Protein
MCA_02036_1
Length
710 amino acids
Browser: contigB:71235-73368-
RNA-seq: read pairs 3463, FPKM 60.2, percentile rank 69.4% (100% = highest expression)
Protein function
| KEGG: | K03138 | TFIIF1 | transcription initiation factor TFIIF subunit alpha |
|---|---|---|---|
| EGGNOG: | 0PJN7 | FG04264.1 | transcription initiation factor IIF subunit alpha |
| SGD closest match: | S000003418 | TFG1 | Transcription initiation factor IIF subunit alpha |
| CGD closest match: | CAL0000187824 | TFG1 | Transcription factor IIF subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_05571_1 | 54.87% | 596 | 1e-167 | MIA_05571_1 |
| A0A167D3X1_9ASCO | 40.85% | 661 | 2e-117 | Transcription factor IIF subunit TFG1 OS=Sugiyamaella lignohabitans GN=TFG1 PE=4 SV=1 |
| UniRef50_A0A167D3X1 | 40.85% | 661 | 5e-114 | Transcription factor IIF subunit TFG1 n=1 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A167D3X1_9ASCO |
| A0A0J9XIP5_GEOCN | 49.23% | 457 | 2e-111 | Similar to Saccharomyces cerevisiae YGR186W TFG1 TFIIF (Transcription Factor II) largest subunit, involved in both transcription initiation and elongation of RNA polymerase II OS=Geotrichum candidum GN=BN980_GECA20s00505g PE=4 SV=1 |
| A0A1E3PMD4_9ASCO | 46.85% | 397 | 7e-87 | Rap30/74 interaction domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_82364 PE=4 SV=1 |
| A0A060TEF7_BLAAD | 43.00% | 393 | 7e-78 | ARAD1D14828p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D14828g PE=4 SV=1 |
| Q6C1W7_YARLI | 41.01% | 473 | 5e-76 | YALI0F12815p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F12815g PE=4 SV=1 |
| Q5AMR1_CANAL | 38.43% | 432 | 6e-58 | Transcription factor IIF subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TFG1 PE=4 SV=1 |
| A0A1E4TJV6_9ASCO | 37.05% | 386 | 6e-54 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_626 PE=4 SV=1 |
| T2FA_YEAST | 44.62% | 251 | 2e-40 | Transcription initiation factor IIF subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFG1 PE=1 SV=2 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.8871
Predicted cleavage: 20
Protein family membership
Domains and repeats
-
Domain
1
100
200
300
400
500
600
710
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_02036_1 MSNPLVKPKKIHRANPLRQPSRPVKKTTKPNVQTTNNVKKALPPKELNSKPSGLLGSSSSSNTPARDYTDFTLSACSSED IRDLRYHIMRFHAPRQRSGERQVIDPSQFTKPIRLHRKDPRNMQNQLTLQEIEERNKRLGITTAIPKDAFNSEEQANNKA GILTDAEGDVEMKPAENTSPTPDAPNVKEEDKANGTTKPAGQEVDLSLIAPDGGARRSKANPFQKKTRQVIVGDPNAKKL RYEEYYPWVLEDFDGKNTWIGNYEAGQTDAYVLFVLDGRGGFKMVPAEKWYKMTPRNKFPTLTAEEVEKQMAKGEQTDRW VMKYFGNDEEKAQKPINMRRRFRTTDNAVGEDGRRPDEDENDIDYEEEFDDDEGAPLMDGNEEEVKEAEKKIKREQQNAK ISSLFQEPDDDEDDEQNQKVDKQGRHMLKYLRSREKNVNYDTDDDENPYASEESSEEEEEITTAPPIGEAVNGSTGEQAS ADTTNSSGNASNGIKTEPDSNPLSQTSPSSPSNGLNNDKAKKDKKLKGKKSKKDKKKKGASKRHMDLPAGMVILNLPPRS LAEFPPNLWNPNLKRRRAEVSEGEEVARGPKTKKVKLKASTSTPTTETNTPPVTAKDTSKSLGSSVDSKPDVPSTTTTPS SKPFNSENLPDLLQEEEVVSIIQARPVSAKELLAELRSRLKMHRDNPNRLKRFVKHVAKLHDGHLVIRDR
GO term prediction
Biological Process
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter
Molecular Function
GO:0003677 DNA binding
GO:0003824 catalytic activity
Cellular Component
GO:0005634 nucleus