Protein
MCA_02009_1
Length
119 amino acids
Browser: contigB:25014-25506+
RNA-seq: read pairs 541, FPKM 55.7, percentile rank 67.7% (100% = highest expression)
Protein function
| EGGNOG: | 0Q0ER | RNA polymerase II |
|---|
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9XJ58_GEOCN | 47.73% | 132 | 1e-35 | Similar to Saccharomyces cerevisiae YBR253W SRB6 Subunit of the RNA polymerase II mediator complex OS=Geotrichum candidum GN=BN980_GECA22s01121g PE=4 SV=1 |
| UniRef50_A0A0J9XJ58 | 47.73% | 132 | 2e-32 | Similar to Saccharomyces cerevisiae YBR253W SRB6 Subunit of the RNA polymerase II mediator complex n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XJ58_GEOCN |
| A0A1E3PFI6_9ASCO | 49.37% | 79 | 2e-22 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_53050 PE=4 SV=1 |
| MED22_YARLI | 39.82% | 113 | 2e-22 | Mediator of RNA polymerase II transcription subunit 22 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SRB6 PE=3 SV=2 |
| MIA_05600_1 | 53.62% | 69 | 3e-22 | MIA_05600_1 |
| A0A1E4TK51_9ASCO | 35.90% | 78 | 2e-11 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_714 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0830
Predicted cleavage: 18
Protein family membership
Domains and repeats
None predicted.
Detailed signature matches
Protein sequence
>MCA_02009_1 MSQQAASQRTTVLLGRVDSATNNLVNEFRQIISLNTNSGKDRSSAASEIYEIETRTVSLITAAEELMFVTRSLRESWILG QVKPINKDIIDGDVDMNYTNDCNSAQMSDDLLEAIMDKS
GO term prediction
Biological Process
GO:0006357 regulation of transcription from RNA polymerase II promoter
Molecular Function
GO:0001104 RNA polymerase II transcription cofactor activity
Cellular Component
GO:0016592 mediator complex