Protein
MCA_01863_1
Length
1,064 amino acids
Gene name: MSH1
Description: DNA mismatch repair protein MSH1, mitochondrial
Browser: contigA:5717095-5720601-
RNA-seq: read pairs 1027, FPKM 11.9, percentile rank 29.0% (100% = highest expression)
Protein function
| Annotation: | MSH1 | DNA mismatch repair protein MSH1, mitochondrial | |
|---|---|---|---|
| EGGNOG: | 0PFR9 | MSH1 | DNA mismatch repair protein |
| SGD closest match: | S000001162 | MSH1 | DNA mismatch repair protein MSH1, mitochondrial |
| CGD closest match: | CAL0000200606 | CAALFM_CR04120CA | Mismatch repair ATPase |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9XI97_GEOCN | 40.64% | 999 | 0.0 | Similar to Saccharomyces cerevisiae YHR120W MSH1 DNA-binding protein of the mitochondria involved in repair of mitochondrial DNA OS=Geotrichum candidum GN=BN980_GECA18s01198g PE=4 SV=1 |
| UniRef50_A0A0J9XI97 | 40.64% | 999 | 0.0 | Similar to Saccharomyces cerevisiae YHR120W MSH1 DNA-binding protein of the mitochondria involved in repair of mitochondrial DNA n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XI97_GEOCN |
| MIA_02394_1 | 40.57% | 1013 | 0.0 | MIA_02394_1 |
| A0A1E3PTH7_9ASCO | 35.97% | 973 | 0.0 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_20105 PE=4 SV=1 |
| MSH1_YEAST | 35.66% | 1001 | 6e-173 | DNA mismatch repair protein MSH1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSH1 PE=1 SV=2 |
| A0A060T1F0_BLAAD | 35.78% | 981 | 7e-172 | ARAD1C16038p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C16038g PE=4 SV=1 |
| A0A1D8PSP4_CANAL | 35.03% | 985 | 5e-155 | Mismatch repair ATPase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR04120CA PE=4 SV=1 |
| A0A167D1C4_9ASCO | 35.04% | 919 | 6e-147 | Mismatch repair ATPase MSH1 OS=Sugiyamaella lignohabitans GN=MSH1 PE=4 SV=1 |
| Q6CF53_YARLI | 32.59% | 988 | 4e-138 | YALI0B10197p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B10197g PE=4 SV=1 |
| A0A1E4TCE1_9ASCO | 34.67% | 698 | 1e-101 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_15349 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.3329
Protein family membership
- DNA mismatch repair protein MutS/MSH (IPR017261)
Domains and repeats
-
Domain
-
Domain
1
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1064
Detailed signature matches
no IPR
Unintegrated signatures
Protein sequence
>MCA_01863_1 MNRNGCKFYDLSLKKSSLLLTKKLQIFLRPQFQFYTLKHFINTKSKKSDTSYITKRGSLIQKVSVDEFLGSKNTPLDDGS TSRSSILGSKPNKLMDHIKQLIDDNPSHIILTQVGSFYELYYHHATEIGPKLNIRVTKKRSSNSNPIPMAGFPLAQIDRH LRTLVKDLNYTVAIVDQYEKELDSLSKFNLTDNMKFDRRITRIVTPGTLIDEPFLERQENNYLLAVGIPSYNYNLLDSTP VALAWIDLTVGSFYAQTTTVANLLSDISVIQPKEILLDHLHKEKKLEMGKWHIDLTQLKSYYLNYRKFLSKSHLGSFLKY FETDNMLTKIKDEETEVGPQIIDTSTPDNFLGLKSKLESEFSSLELSCIISILDYLEEHLPQLPFTIQIPERKIDTKLMK IDSRSRHSLELTTPINSSSKKGTLLSAIKRTVSDSGSRLLNEWIRAPLVDKDEITKRHDIVSELTENEKLLDDLVQLLRI SNDPVRTLQKISLGKGRISDIYALALDMQLFTDLKKTIEQNHKSKTGTKTPHLANLVEPIVSCSLLSKSILENIDEEAVR SIQQENISVSEAKDDIYDAIDILDSNINSYKEEDKADEQGQKWAIRSTASKKLNDLHKRLSHFESSKDLLKVELEAKFNS LIEEAPVQGNGRASKSAIKVELKSNNGGHYVYLSGSNLSRMKIDFEMEKNIVNKHKRAMSLRVPEWTQLAVEAENVQADI KTEERAIFNKMKSKILAKRHAIRANSHILDQLDVLSSFATLANECGLCRPEMTDSNTTSIVDGRHMTVEQGLILESRGIF VPNDCFLGSSEYDSNVWIITGPNMGGKSTFLRQVALITILAQMGSFVPARRAKLGIVDQIFCRVGAGDDLYRDQSTFMVE MIETTNILRNATEKSLAILDEVGRGTSTRDGVAIAFASIMHLSLVNKCRTLFATHFGKELQSLICKDSNIDIKPKRGRKS LKEKQIKAEMEYIRKDIKFYCTNIDFFDLDKNDRDLIERKEANSSIMLQDVESFVDAKFSFSHKLVPGISDDSHGLRVAA MAGFPMKGFEFAKTALLNLSDNDK
GO term prediction
Biological Process
GO:0006298 mismatch repair
Molecular Function
GO:0005524 ATP binding
GO:0030983 mismatched DNA binding
Cellular Component
None predicted.