Protein

MCA_01779_1

Length
245 amino acids

Description: protein with ribosomal L9/ ribonuclease H1 domain

Browser: contigA:5440733-5441471+

RNA-seq: read pairs 15, FPKM 0.8, percentile rank 8.2% (100% = highest expression)

Protein function

Annotation:protein with ribosomal L9/ ribonuclease H1 domain
KEGG:K03469rnhA ribonuclease HI [EC:3.1.26.4]
EGGNOG:0PJMDPGUG_00082ribonuclease H
SGD closest match:S000004847RNH1Ribonuclease H
CGD closest match:CAL0000184579orf19.5564Uncharacterized protein

Protein alignments

%idAln lengthE-value
MIA_01558_133.46%2602e-37MIA_01558_1
UniRef50_B2AD6534.82%2471e-32Ribonuclease H n=2 Tax=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) TaxID=515849 RepID=B2AD65_PODAN
A0A161HJH2_9ASCO41.25%1603e-32Ribonuclease H OS=Sugiyamaella lignohabitans GN=RNH1 PE=3 SV=1
A0A1D8PQ03_CANAL32.56%2157e-31Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.5564 PE=4 SV=1
A0A0J9X3A6_GEOCN42.95%1498e-29Ribonuclease H OS=Geotrichum candidum GN=BN980_GECA01s10097g PE=3 SV=1
A0A1E3PU38_9ASCO41.21%1652e-28Ribonuclease H OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49110 PE=3 SV=1
A0A060TD98_BLAAD39.74%1562e-28Ribonuclease H OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D41536g PE=3 SV=1
Q6CH42_YARLI30.77%2342e-28YALI0A12705p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A12705g PE=4 SV=1
RNH1_YEAST30.91%2204e-17Ribonuclease H OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNH1 PE=1 SV=2

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.4000
Predicted cleavage: 26

Protein family membership

Domains and repeats

  1. Domain
1 50 100 150 200 245

Detailed signature matches

  1. Family IPR017067
    Ribonuclease H1, eukaryote
    1. PIRSF036852 (RNase_...)
  2. Domain IPR009027
    Ribosomal protein L9/RNase H1, N-terminal
    1. SSF55658 (L9 N-doma...)
  3. Domain IPR011320
    Ribonuclease H1, N-terminal
    1. PF01693 (Cauli_VI)
    2. G3DSA:3.40.97...
  4. Domain IPR012337
    Ribonuclease H-like domain
    1. SSF53098 (Ribonucle...)
    2. G3DSA:3.30.42...
  5. Domain IPR002156
    Ribonuclease H domain
    1. PF00075 (RNase_H)
    2. PS50879 (RNASE_H)
Unintegrated signatures no IPR
Unintegrated signatures
  1. cd09280 (RNase_HI_e...)

Residue annotation

  1. RNA/DNA hybrid bin...

Protein sequence

>MCA_01779_1
MITFQFSFLNKYTHLRLFSELKFLLETKSKKYYAVKKGYFIGVYDNWMDARKQTDGVSHGDMKVFKNYDKAADYANLNEN
KNVLHSLDIYTDGSCLGNGNCDAKAGCGIWYGDNDDRNASYTIRGKKHDNNRAEILAISIALQNVLKSKNHWKQVVIHTD
SIYSIGCLTQWYLECEKMGYTQKNGKPVVNGDIIKKSRKTIELLENSFTKVLFKHVHGHSGNYGNCMANCLARKGARGEG
IYTDS

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0000287 magnesium ion binding
GO:0003676 nucleic acid binding
GO:0004523 RNA-DNA hybrid ribonuclease activity

Cellular Component

None predicted.