Protein

MCA_01775_1

Length
215 amino acids

Description: protein with ribosomal L9/ ribonuclease H1 domain

Browser: contigA:5434303-5434951+

RNA-seq: read pairs 386, FPKM 22.1, percentile rank 44.0% (100% = highest expression)

Protein function

Annotation:protein with ribosomal L9/ ribonuclease H1 domain
KEGG:K03469rnhA ribonuclease HI [EC:3.1.26.4]
EGGNOG:0PJMDPGUG_00082ribonuclease H
CGD closest match:CAL0000191701RNH1Rnh1p

Protein alignments

%idAln lengthE-value
UniRef50_A0A068S1G033.47%2487e-33Ribonuclease h n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068S1G0_9FUNG
MIA_01558_131.13%2574e-32MIA_01558_1
A0A161HJH2_9ASCO30.48%2696e-29Ribonuclease H OS=Sugiyamaella lignohabitans GN=RNH1 PE=3 SV=1
Q5ABY8_CANAL34.55%2205e-26Rnh1p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RNH1 PE=4 SV=1
Q6CGX9_YARLI36.06%2082e-25YALI0A15059p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A15059g PE=4 SV=1
A0A0J9X3A6_GEOCN36.25%1603e-24Ribonuclease H OS=Geotrichum candidum GN=BN980_GECA01s10097g PE=3 SV=1
A0A1E3PU38_9ASCO31.96%2192e-22Ribonuclease H OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49110 PE=3 SV=1
A0A060TD98_BLAAD37.42%1551e-21Ribonuclease H OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D41536g PE=3 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1322
Predicted cleavage: 16

Protein family membership

Domains and repeats

  1. Domain
1 20 40 60 80 100 120 140 160 180 200 215

Detailed signature matches

  1. Family IPR017067
    Ribonuclease H1, eukaryote
    1. PIRSF036852 (RNase_...)
  2. Domain IPR009027
    Ribosomal protein L9/RNase H1, N-terminal
    1. SSF55658 (L9 N-doma...)
  3. Domain IPR011320
    Ribonuclease H1, N-terminal
    1. PF01693 (Cauli_VI)
    2. G3DSA:3.40.97...
  4. Domain IPR012337
    Ribonuclease H-like domain
    1. SSF53098 (Ribonucle...)
    2. G3DSA:3.30.42...
  5. Domain IPR002156
    Ribonuclease H domain
    1. PF00075 (RNase_H)
    2. PS50879 (RNASE_H)
Unintegrated signatures no IPR
Unintegrated signatures
  1. cd09280 (RNase_HI_e...)

Residue annotation

  1. RNA/DNA hybrid bin...

Protein sequence

>MCA_01775_1
MYSEPSKYYAVRRGYSPGVYYNFMDAREQTDGYPNNDMRVFYDHDDAVEYLGYDSDAEEEKDVETVYVDGSCIGNGVYDN
ASMGVGFWYGDGNPRTQGCKLIGAPRSTNNIAELTAIEYAIRFALGTGIDRLVIYTDSKYCIDCFTKFLPKWVRNGFITC
QGTPMANKDRIILVNNLMRKLRVEGTEIDLEYVPAHSGVYGNERANELAIRAARA

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0000287 magnesium ion binding
GO:0003676 nucleic acid binding
GO:0004523 RNA-DNA hybrid ribonuclease activity

Cellular Component

None predicted.