Protein

MCA_01664_1

Length
1,022 amino acids

Description: Reverse transcriptase

Browser: contigA:5119476-5122545+

RNA-seq: read pairs 3, FPKM 0.0, percentile rank 2.1% (100% = highest expression)

Protein function

Annotation:Reverse transcriptase
EGGNOG:0QDZFReverse transcriptase (RNA-dependent DNA polymerase)
SGD closest match:S000003649TY4B-JTransposon Ty4-J Gag-Pol polyprotein

Protein alignments

%idAln lengthE-value
UniRef50_A0A0J8B2Y037.44%2033e-28Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B2Y0_BETVU
MIA_06416_129.39%2454e-20MIA_06416_1
A0A161HJI4_9ASCO32.94%1703e-16Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_4398 PE=4 SV=1
YJ41B_YEAST25.93%2707e-14Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-J PE=3 SV=3

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1714

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 700 800 900 1022

Detailed signature matches

  1. Domain IPR012337
    Ribonuclease H-like domain
    1. SSF53098 (Ribonucle...)
    2. G3DSA:3.30.42...
  2. Domain IPR001584
    Integrase, catalytic core
    1. PF00665 (rve)
    2. PS50994 (INTEGRASE)
Unintegrated signatures no IPR
Unintegrated signatures
  1. mobidb-lite (disord...)

Protein sequence

>MCA_01664_1
MYLLFNDDWSPQLLARAAEIERTQGGHYSYDLMRLDTATLNTLKRDFCLYLVAYTKNVIIIPAWQRKLDNINNESPRMFF
EQLTDFVTEHHQYVQTEQTVLNISAHLRNTTTGIKSKLSRNEESFYSYVNSTKLMAYLIHEKGKRDPDYAYKKIENIDTP
IKYLKGEQFKYFATDYDIYKISPNFKSRYRDYTSEINRFEEFYTKELKLIAKTTDNPITKFAIDYANSITATTETDSKQV
RELKRLLVMTNEAHAIHHATTIEAYMLSQREIYLHNRGVLLSGVNNKSVLKKLTNSKPHLIDTRYREFNIGDIAEIESEQ
NYPRAQIVKPITNYSKTIFEYGSRDSDFNQIKAKLCRDYQEYNEAVKKNTKKPNTSGNNSNNDGNKNTTNNNNSNTSNSN
NENNNNNNYNNNNNFNRNRGFNQNNRNQTRAANHVEQRSRQINWDNADSEIDLTNLSTPDISDMDGGVYNVGLATHKNSN
DHTGVKQTGRSINKDTNFTITPNMKFKVYDSDELDSETLIDSGASVAVINDKNLFYELEERKTVLDGPSGSGTVTSYGQG
KVVYMLDNGEKPFLRSFNAYFVPCSRYNLIPEGFLLEHLSIGGLGKSGVEESPRKCYNNKDEYIYGFYSPRTLYTYFNGS
FLVKLEKPNTNTITKKNQKISRTSENVKDNHTPVNDYTTSDNTENNESDGEVEHQEVGGEILFDTPDDDADFELDPDDAN
YSYGGNPLYNNDTSTLVFERRESPKTDSTNLEIRPTSQALVWHNTYNHAPTRQMKKLFEVNNQNIPITKYDEELIANCPF
CSVSKFTRNFKPEEHANKFENSAPLSTIHADITGYYPYPDLSGNRYALTIVDGYSNYVTTITIQTKDQATQKLIDWINKQ
ENYFRGKTNYNVKRLQCDNGSEFTNNEFRQFCSEKGIEITFSPPDEPSRNGKVERFNRTIEEKAQAACQKAGLPHEFYWS
FAKIHASLVYNYVALDSNNKSPYELFCGKAPNTKGLLPLDAVLMYQELEAIYTLQEVVLLSI

GO term prediction

Biological Process

GO:0015074 DNA integration

Molecular Function

GO:0003676 nucleic acid binding

Cellular Component

None predicted.