Protein

MCA_01510_1

Length
705 amino acids

Gene name: CWC22

Description: Pre-mRNA-splicing factor CWC22

Browser: contigA:4677997-4680115-

RNA-seq: read pairs 1345, FPKM 23.5, percentile rank 45.9% (100% = highest expression)

Protein function

Annotation:CWC22Pre-mRNA-splicing factor CWC22
KEGG:K13100CWC22 pre-mRNA-splicing factor CWC22
EGGNOG:0PHRNCWC22Pre-mRNA-splicing factor cwc-22
SGD closest match:S000003510CWC22Pre-mRNA-splicing factor CWC22
CGD closest match:CAL0000192468CWC22Pre-mRNA-splicing factor CWC22

Protein alignments

%idAln lengthE-value
MIA_02782_170.47%5350.0MIA_02782_1
A0A0J9XC76_GEOCN65.61%5380.0Similar to Saccharomyces cerevisiae YGR278W CWC22 Spliceosome-associated protein that is required for pre-mRNA splicing OS=Geotrichum candidum GN=BN980_GECA09s01143g PE=4 SV=1
A0A1E3PS81_9ASCO57.56%5420.0MIF4G-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_68438 PE=4 SV=1
A0A167CLY9_9ASCO57.19%5490.0Cwc22p OS=Sugiyamaella lignohabitans GN=CWC22 PE=4 SV=1
A0A060T5M6_BLAAD57.84%5360.0ARAD1B08140p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B08140g PE=4 SV=1
UniRef50_P0CM9653.47%5481e-176Pre-mRNA-splicing factor CWC22 n=42 Tax=Dikarya TaxID=451864 RepID=CWC22_CRYNJ
CWC22_YARLI50.72%5525e-162Pre-mRNA-splicing factor CWC22 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CWC22 PE=3 SV=1
A0A1E4TMH8_9ASCO40.73%4962e-108Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_20522 PE=4 SV=1
CWC22_CANAL39.20%5511e-93Pre-mRNA-splicing factor CWC22 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CWC22 PE=3 SV=2
CWC22_YEAST28.11%4983e-53Pre-mRNA-splicing factor CWC22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CWC22 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0884

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 100 200 300 400 500 600 705

Detailed signature matches

  1. Domain IPR016024
    Armadillo-type fold
    1. SSF48371 (ARM repeat)
  2. Domain IPR003890
    MIF4G-like, type 3
    1. SM00543 (if4_15)
  3. Domain IPR003891
    Initiation factor eIF-4 gamma, MA3
    1. PF02847 (MA3)
    2. PS51366 (MI)
    3. SM00544 (ma3_7)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:1.25.40...
  3. mobidb-lite (disord...)

Protein sequence

>MCA_01510_1
MSSTTSNGERSRDELLKEYERLKDLRAQGRYVPPARLRALEEKLNLEQSSEQKQRQEWDNLKKSINSLINKVNQKNIKLI
VQQLFKCNLVRGRGLFCRSIMKAQALALPFTPVYASLVAIINSKLPMIGSLLLERLILQFRKAFRRNNKPLCLSTTIFIA
HLCNQRVAHEILALQILQLLLEKPTDDSVEIAVEFMKECGAYLSENSKAATTGVFDRLLELVHDGSIDKRTEYLVENLFK
IRKENFEGHPAIPEELDLVEEEEQTRHVISFDDKDIKAQDILNVFKFDENYEANEEKYNEIKNDILGDSDEEEEENGSED
DSSASESEDEEPQADPSKPVIKDMTNVELTNLRKTIYLTIMSSMSVDEAAHKLLRLQVPDGNEIEIVNMIVETCAQEKIY
NKTYGGVANRFCYKAVFWRNKFAESFKHYYEVIHRYDTNQIRNIATLFGYILATDALDWSVFEVVHMNEEETTSSSRIFI
KLLFQEMKQEMGEKAMIERFNEEYLQPFLVNMFPMGDDPDAVRFSINYFTAIGLGVLTEKMREYLDNMPEPESSEEQSEE
ELNESDEERELSDTETKPKLKKEDSSRSRSSSVASRSYSPPPRRRRRESDASVSDRESSDEERSKPRRRRRDSSSSDSSS
RGRRRERSLSPIRTSKREYSPPPKRPRNWDEVPSKTSSTESKIKKEEAVDKKESSRHRAKASDYL

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003723 RNA binding
GO:0005488 binding
GO:0005515 protein binding

Cellular Component

None predicted.