Protein
MCA_01490_1
Length
1,002 amino acids
Browser: contigA:4616767-4619898+
RNA-seq: read pairs 1727, FPKM 21.3, percentile rank 42.9% (100% = highest expression)
Protein function
KEGG: | K12852 | EFTUD2 | 116 kDa U5 small nuclear ribonucleoprotein component |
---|---|---|---|
EGGNOG: | 0PHCW | PGUG_01462 | u5 small nuclear ribonucleoprotein component |
SGD closest match: | S000001656 | SNU114 | Pre-mRNA-splicing factor SNU114 |
CGD closest match: | CAL0000191291 | SNU114 | U5 snRNP GTPase |
Protein alignments
%id | Aln length | E-value | ||
---|---|---|---|---|
MIA_00356_1 | 67.17% | 990 | 0.0 | MIA_00356_1 |
A0A0J9XAK3_GEOCN | 58.41% | 993 | 0.0 | Similar to Saccharomyces cerevisiae YKL173W SNU114 GTPase component of U5 snRNP involved in mRNA splicing via spliceosome OS=Geotrichum candidum GN=BN980_GECA07s02419g PE=4 SV=1 |
A0A060T6H6_BLAAD | 50.50% | 996 | 0.0 | ARAD1C20130p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C20130g PE=4 SV=1 |
A0A1E3PH89_9ASCO | 49.56% | 1017 | 0.0 | p-loop containing nucleoside triphosphate hydrolase protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52639 PE=4 SV=1 |
UniRef50_A0A1E3PH89 | 49.56% | 1017 | 0.0 | p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PH89_9ASCO |
A0A167F681_9ASCO | 52.62% | 935 | 0.0 | U5 snRNP GTPase SNU114 OS=Sugiyamaella lignohabitans GN=SNU114 PE=4 SV=1 |
A0A1E4TKW9_9ASCO | 43.01% | 930 | 0.0 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_86108 PE=4 SV=1 |
Q6CGB0_YARLI | 42.79% | 1005 | 0.0 | YALI0A20768p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A20768g PE=4 SV=1 |
SN114_YEAST | 33.37% | 1040 | 9e-180 | Pre-mRNA-splicing factor SNU114 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNU114 PE=1 SV=1 |
A0A1D8PH71_CANAL | 33.79% | 1086 | 2e-164 | U5 snRNP GTPase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SNU114 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0348
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
1
100
200
300
400
500
600
700
800
900
1002
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
-
-
-
cd01683 (EF2_IV_snRNP)
-
cd04090 (EF2_II_snRNP)
-
cd04167 (Snu114p)
-
mobidb-lite (disord...)
Residue annotation
-
G1 box cd04167
-
putative GEF inter...
-
GTP/Mg2+ binding s...
-
Switch I region cd...
-
G2 box cd04167
-
G3 box cd04167
-
Switch II region c...
-
G4 box cd04167
-
G5 box cd04167
Protein sequence
>MCA_01490_1 MDEDLYDEFGNYIGPDSDEEANSPVDVENADDLAKQYIDNDDDEPEDDGVENHETNDSMAIVLHEDKQYYPSAQEIYGEG VETMVQERDAQDLSEPIIAPVKVNTHMAEERDLPELTYSREWQASLMQLPDHIRNIALVGQLHHGKTSFLDMLINETHIF PPREGRKQDVQQRYTDTHILEQKRGITIKSSPISLVLKNTKGKSFLFNIMDTPGHSNFLDEVSIAARYADGFVLVVDVLE GLLTGTKHIIDYAIKYNIPLVLVLNKIDRLIVELKLPPTEALYKIQYTIDQVNSYINSKCPFKNKRYLPFSPELNNVVFS SSTCNFIFTLKSFALKYQQEYSADLDVEAFAKRLWGNIFYNKESRKFTRKPVETGAKRTFEHFILIPLYKIFTHVLEEEK DSLSGTLAKLNISLKNSTYKLDVKPLLQTVFKLFFEDSSALVDSILEHFPSPTEGSQRYLERFYSGSPEGIEYKAMLNGD PKGPLVVHVAKLYNRTDIESGRFYALGRVMSGTLWKNANLSVLGETYTNFDFEDLQECVASELWNYQSRYKVPIDGVTPG NWVLIQGVDSSITKTGTIYQTNELDEEEMHIFKPIKYLGEPVLKVAVEPYNPSELPKMLDGLLSIAKSYGAVQTKAEESG EHVIIGTGEMYMDCVLHDLRTVYANMHVKVSDPVAKFAETCLETSAIRAYTETPNKHNKITIIAEPLSEEICDDIENEVV TLGGPIDKYGVSGRSGEKWTPKKVAQFFQEKYGWDIMSARSIWSFGPEISKPNILQDDTLSEEVDKLAMKSIKEAVKQGF QWAIRDGPLCDEPIRNVRFKIIEAELSKIPSQRNSSQIISTVRRACYSAMLLASPRLMEPLYQFEIIVPFNHIAAVKTIV QTQRRGHIDTDTPLLGTPLRILIGDVPVIDSAGFETDIRIITKGAGFISSLQFYKWSIVPGDPLDKDQDGAVRPLEVASP QSMAREFVIKTRKRKGLSDQPTVTKYLDESLLESLKDSGLLD
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding
Cellular Component
None predicted.