Protein

MCA_01465_1

Length
228 amino acids


Gene name: VTI1

Description: t-SNARE VTI1

Browser: contigA:4545362-4546165+

RNA-seq: read pairs 2261, FPKM 122.0, percentile rank 82.0% (100% = highest expression)

Protein function

Annotation:VTI1t-SNARE VTI1
KEGG:K08493VTI1 vesicle transport through interaction with t-SNAREs 1
EGGNOG:0PF82PGUG_02200Vesicle transport V-snare protein
SGD closest match:S000004810VTI1t-SNARE VTI1
CGD closest match:CAL0000188283VTI1V-SNARE protein

Protein alignments

%idAln lengthE-value
MIA_04977_170.20%1982e-96MIA_04977_1
A0A0J9X541_GEOCN71.55%2322e-94Similar to Saccharomyces cerevisiae YMR197C VTI1 Protein involved in cis-Golgi membrane traffic OS=Geotrichum candidum GN=BN980_GECA02s07809g PE=4 SV=1
A0A060TAX9_BLAAD68.47%2222e-87ARAD1D29942p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D29942g PE=4 SV=1
A0A1E3PIH9_9ASCO57.14%2031e-73V-snare-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51809 PE=4 SV=1
Q6CFZ4_YARLI60.18%2268e-70YALI0B02244p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B02244g PE=4 SV=1
UniRef50_Q6CFZ460.18%2262e-66YALI0B02244p n=33 Tax=Saccharomycetales TaxID=4892 RepID=Q6CFZ4_YARLI
A0A1E4TLN1_9ASCO55.16%2236e-62Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_90531 PE=4 SV=1
A0A161HM49_9ASCO67.38%1419e-59Vti1p OS=Sugiyamaella lignohabitans GN=VTI1 PE=4 SV=1
A0A1D8PJW1_CANAL46.91%1943e-51V-SNARE protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VTI1 PE=4 SV=1
VTI1_YEAST41.29%2016e-40t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTI1 PE=1 SV=3

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0016

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 228

Detailed signature matches

    1. SSF47661 (t-snare p...)
    1. PF05008 (V-SNARE)
    1. SM00397 (tSNARE_6)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PF12352 (V-SNARE_C)
  2. SSF58038 (SNARE fus...)
  3. TRANSMEMBRANE (Tran...)
  4. cd15862 (SNARE_Vti1)

Residue annotation

  1. heterotetramer int...
  2. zero layer cd15862

Protein sequence

>MCA_01465_1
MSLADNDLITKYETDFNLTFSEITSKIKELENEASVEERKKLSSDVERALDEAYEILDQFTIEIQNIQSSSRGKYNSKLR
EFRSSLDKSKRDLKRSLESSSRIELFGARAIDNGSGASKSDDIALDQRQELLSGTASLERSSQRLRDSQRIANETELIGA
NILTDLRGQREQIINSRNTLMEADGYVDKSIRTLRGMARRMATNRIITVAIIAVLIILILLVIASKFW

GO term prediction

Biological Process

GO:0006886 intracellular protein transport
GO:0016192 vesicle-mediated transport

Molecular Function

None predicted.

Cellular Component

GO:0016020 membrane