Protein

MCA_01360_1

Length
919 amino acids

Description: Reverse transcriptase

Browser: contigA:4242148-4244908+

RNA-seq: read pairs 403, FPKM 5.4, percentile rank 18.3% (100% = highest expression)

Protein function

Annotation:Reverse transcriptase
EGGNOG:0QDZFReverse transcriptase (RNA-dependent DNA polymerase)

Protein alignments

%idAln lengthE-value
UniRef50_A0A085LQ2625.97%4392e-24Uncharacterized protein (Fragment) n=3 Tax=Trichuris suis TaxID=68888 RepID=A0A085LQ26_9BILA
MIA_06017_125.22%3458e-21MIA_06017_1
A0A161HJI4_9ASCO22.14%3935e-14Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_4398 PE=4 SV=1
YCH4_YEAST25.27%2772e-13Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.2172

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 700 800 919

Detailed signature matches

  1. Domain IPR013103
    Reverse transcriptase, RNA-dependent DNA polymerase
    1. PF07727 (RVT_2)

Protein sequence

>MCA_01360_1
MDDKLNNNKIYALISRADLESRFVSDILYAKQEDKRLGIPLISYQDSRKFIDSVTLALIKLDPKQVVLYFVTVGEWPPMM
QLMKDEINQNALSQLETYFFRFLDTYLRRFLVCSEARLNILDRTHSAPELYKQLCANFCDNGVKAVTEQLMHLEKINQNR
YGSAKAIKIVESVTELHRTIEFLSSESNISKESLKSFHYYTPKEILTQATEQSDIPCFQDPTLDNEFFSKASVIDDSLNN
SSKSGYLDSPLHVDKPEKDQFYTIINETSSKLDISEEDKCTLTNAGLCLAVEKQNLYRTIATLQRQISLLEKGIIISYSK
SKKLVEGLATTSKDTKSILKIAKSVATDISTENEEELKPLSIPFSGYHDLCCYERSSINFHYRRTLELCEEFKSDQKTRK
TLLGSLYFWSDTLSSEEKSLHPKGQYVARLIKSGAITPVEKHPQGTVLDCHFEKIESCLCKDMEFRLVVNEKEQVGDVDS
HETDVPIPSHSLLRLFFALAQGLDHNISQFEFPDAIEQGDLEEEIYIELPPELNIKYAKLNRCLSGLKQAKYCWTKKLNS
TLEKFGFKRSSVEKSFYILKDENHLTMLIVHFDNILVSSSDPQGLDRVRGMFILDGKMYIRDLGFPKTFFGIDLVRMGGK
IGMTAKGEINKLVAYYNENLEKLLSKPDPPDLMLSKALTHYRTLIEKLKQISKIWRPDITAEVSILDTNVFEDKPKENFD
RLKKLIEHLSATISHQLVFSKPKDDIISPTGYVGSYVPSEKQHLGNFCRTGYIFQVFDNPVLWMSQKEKETANSSIEGEF
IACNTFLAHIKNFQILLGDELHLLENAPIEIALTNKKIVSYLNKRIKYDSESSYSKTKYLDAITLLEQMGIEVIFSHPCY
IMASAFTQKLAYNSKLLETLENLHVEEIKECMDLVKLNN

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.