Protein
MCA_01336_1
Length
142 amino acids
Gene name: RIM1
Description: Single-stranded DNA-binding protein RIM1, mitochondrial
Browser: contigA:4179747-4180273+
RNA-seq: read pairs 1848, FPKM 159.7, percentile rank 85.5% (100% = highest expression)
Protein function
| Annotation: | RIM1 | Single-stranded DNA-binding protein RIM1, mitochondrial | |
|---|---|---|---|
| EGGNOG: | 0PP5Y | RIM1 | Single-stranded DNA-binding protein |
| SGD closest match: | S000007222 | RIM1 | Single-stranded DNA-binding protein RIM1, mitochondrial |
| CGD closest match: | CAL0000182022 | RIM1 | Rim1p |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9X2H0_GEOCN | 45.97% | 124 | 7e-39 | Similar to Saccharomyces cerevisiae YCR028C-A RIM1 Single-stranded DNA-binding protein essential for mitochondrial genome maintenance OS=Geotrichum candidum GN=BN980_GECA01s01737g PE=4 SV=1 |
| UniRef50_A0A0J9X2H0 | 45.97% | 124 | 1e-35 | Similar to Saccharomyces cerevisiae YCR028C-A RIM1 Single-stranded DNA-binding protein essential for mitochondrial genome maintenance n=2 Tax=Saccharomycetales TaxID=4892 RepID=A0A0J9X2H0_GEOCN |
| MIA_05705_1 | 43.85% | 130 | 4e-35 | MIA_05705_1 |
| A0A167FMY4_9ASCO | 40.65% | 123 | 2e-28 | Rim1p OS=Sugiyamaella lignohabitans GN=RIM1 PE=4 SV=1 |
| A0A060T076_BLAAD | 38.52% | 122 | 6e-27 | ARAD1C10626p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C10626g PE=4 SV=1 |
| A0A1E3PG35_9ASCO | 37.50% | 112 | 4e-25 | Nucleic acid-binding protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_47575 PE=4 SV=1 |
| RIM1_YEAST | 37.93% | 116 | 2e-24 | Single-stranded DNA-binding protein RIM1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIM1 PE=1 SV=1 |
| A0A1E4TFS6_9ASCO | 38.74% | 111 | 2e-16 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_31471 PE=4 SV=1 |
| Q5AA01_CANAL | 36.94% | 111 | 3e-15 | Rim1p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RIM1 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.9683
Predicted cleavage: 28
Protein family membership
- Primosome PriB/single-strand DNA-binding (IPR000424)
Domains and repeats
-
Domain
1
20
40
60
80
100
120
142
Detailed signature matches
-
-
SSF50249 (Nucleic a...)
-
no IPR
Unintegrated signatures
-
-
PIRSF002070 (SSB)
-
mobidb-lite (disord...)
Residue annotation
-
dimer interface cd...
-
ssDNA binding site...
-
tetramer (dimer of...
Protein sequence
>MCA_01336_1 MLSSFASSLRRQCVSNVRSFSSTARAMDVARASLLGRVGADIEVRESQNGKMYIRYPLAVSTGKDHTSWFNVLVFNENQV NFMSQYVKKGNLLYVDADIHIEKRELEDGRKVESISFIQQKVNRPSVPKPKSNESESEQHEE
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003697 single-stranded DNA binding
Cellular Component
None predicted.