Protein
MCA_01255_1
Length
486 amino acids
Gene name: PRP46
Description: Pre-mRNA-splicing factor PRP46
Browser: contigA:3951897-3953358+
RNA-seq: read pairs 751, FPKM 19.1, percentile rank 40.2% (100% = highest expression)
Protein function
| Annotation: | PRP46 | Pre-mRNA-splicing factor PRP46 | |
|---|---|---|---|
| KEGG: | K12862 | PLRG1 | pleiotropic regulator 1 |
| EGGNOG: | 0PG61 | PRP46 | factor PRP46 |
| SGD closest match: | S000006072 | PRP46 | Pre-mRNA-splicing factor PRP46 |
| CGD closest match: | CAL0000199442 | PRP46 | Pre-mRNA-splicing factor PRP46 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9XIA6_GEOCN | 70.87% | 436 | 0.0 | Similar to Saccharomyces cerevisiae YPL151C PRP46 Member of the NineTeen Complex (NTC) that contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2 OS=Geotrichum candidum GN=BN980_GECA16s01440g PE=4 SV=1 |
| MIA_06238_1 | 68.54% | 480 | 0.0 | MIA_06238_1 |
| A0A1E3PD03_9ASCO | 62.44% | 450 | 0.0 | Putative mRNA splicing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_53567 PE=4 SV=1 |
| A0A060TCD3_BLAAD | 65.05% | 432 | 0.0 | ARAD1D40854p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D40854g PE=4 SV=1 |
| A0A167C3W8_9ASCO | 59.52% | 462 | 0.0 | Prp46p OS=Sugiyamaella lignohabitans GN=PRP46 PE=4 SV=1 |
| PRP46_YARLI | 58.43% | 445 | 0.0 | Pre-mRNA-splicing factor PRP46 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PRP46 PE=3 SV=2 |
| UniRef50_K0KGD8 | 56.88% | 429 | 0.0 | Putative WD repeat-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=K0KGD8_WICCF |
| A0A1E4TAT2_9ASCO | 67.43% | 304 | 4e-155 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_29083 PE=4 SV=1 |
| PRP46_YEAST | 48.52% | 439 | 1e-151 | Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP46 PE=1 SV=1 |
| PRP46_CANAL | 43.77% | 361 | 2e-96 | Pre-mRNA-splicing factor PRP46 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PRP46 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0953
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Repeat
-
Repeat
1
50
100
150
200
250
300
350
400
450
486
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
structural tetrad ...
Protein sequence
>MCA_01255_1 MSFNKEVTNKTDYDEIHAIARKIDTQARTLFDGPSHSIPSYYGLSSNDTSFTDINSAKLRLVHKFRSEYKPSETLPAHLQ KKIDAAAQKRNNGKILSNKVSKHVKNQNTNDTQRRLIQDIPESSQALTIKSNVNQQSFNSNGTTSNSLINKDLFAQEKPE WHRPWKIMRVINGHQGWVRSVCVEPDNQWFATGSTDRTIKIWDLASGQLKLSLTGHIMGVRGLAVSDRHPYLFSCGEDKM VKCWDLEMNKVIRHYHGHLSSVYSLDLHPTLDVLVSAGNDAVARVWDIRTRNAIHVLTGHKAAISQVRCQEADPQIITTS MDSTVRLWDLAAGKTMAVLTHHKKAVRGLALHPTEFTFATASPDNIKEWRCPEGSFIHNFHPPINSIINTLSVNADGVMF AGGDNGTVGFFDWKTGHKFQETTTLAGPGSLDSENGIFASTFDKSGLRLITCEADKSIKIWKEEETATSESHPGIPWKPR LGRYNF
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.