Protein

MCA_01230_2

Length
265 amino acids

Gene name: RPS0

Description: 40S ribosomal protein S0

Browser: contigA:3871955-3872753+

RNA-seq: read pairs 57473, FPKM 2669.7, percentile rank 98.2% (100% = highest expression)

Protein function

Annotation:RPS040S ribosomal protein S0
KEGG:K02998RP-SAe small subunit ribosomal protein SAe
EGGNOG:0PGPWRPS0Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (By similarity)
SGD closest match:S000004038RPS0B40S ribosomal protein S0-B
CGD closest match:CAL0000191976RPS040S ribosomal protein S0

Protein alignments

%idAln lengthE-value
MIA_01853_186.76%2042e-111MIA_01853_1
A0A0J9X8F1_GEOCN81.37%2041e-10740S ribosomal protein S0 OS=Geotrichum candidum GN=RPS0 PE=3 SV=1
A0A060T537_BLAAD80.98%2054e-10740S ribosomal protein S0 OS=Blastobotrys adeninivorans GN=RPS0 PE=3 SV=1
RSSA_CANAL79.00%2002e-10140S ribosomal protein S0 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPS0 PE=2 SV=2
UniRef50_O4281779.00%2005e-9840S ribosomal protein S0 n=106 Tax=Eukaryota TaxID=2759 RepID=RSSA_CANAL
A0A1E3PIC8_9ASCO78.82%2032e-10140S ribosomal protein S0 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=RPS0 PE=3 SV=1
RSSA2_YEAST74.00%2003e-9640S ribosomal protein S0-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS0B PE=1 SV=2
A0A1E4TF40_9ASCO74.02%2041e-9440S ribosomal protein S0 OS=Tortispora caseinolytica NRRL Y-17796 GN=RPS0 PE=3 SV=1
RSSA_YARLI75.12%2018e-9340S ribosomal protein S0 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPS0 PE=3 SV=2
A0A167CIV1_9ASCO84.57%1751e-9240S ribosomal protein S0 OS=Sugiyamaella lignohabitans GN=RPS0A PE=3 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0166

Protein family membership

Domains and repeats

  1. Domain
1 50 100 150 200 265

Detailed signature matches

  1. Family IPR001865
    Ribosomal protein S2
    1. PR00395 (RIBOSOMALS2)
    2. PF00318 (Ribosomal_S2)
    3. cd01425 (RPS2)
  2. Family IPR005707
    Ribosomal protein S2, eukaryotic/archaeal
    1. TIGR01012
  3. Family IPR027498
    Ribosomal protein S2, eukaryotic
    1. MF_03015 (Ribosomal...)
  4. Domain IPR023591
    Ribosomal protein S2, flavodoxin-like domain
    1. SSF52313 (Ribosomal...)
  5. SITE IPR018130
    Ribosomal protein S2, conserved site
    1. PS00962 (RIBOSOMAL_...)
    2. PS00963 (RIBOSOMAL_...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:3.40.50...
  2. mobidb-lite (disord...)

Residue annotation

  1. rRNA interaction s...
  2. S8 interaction sit...
  3. putative laminin-1...

Protein sequence

>MCA_01230_2
MSDILTLTPEDAQLLIAANAHLGSKNKVTHMEPYIYETRPDGVNVINIGKTWEKIVLAARVIAAVPNAADVVAISARIYG
QRAVLKFASHTGATAIAGRFTPGSFTNYITRSFKEPRLIVVTDTRLDAQAIRESSYVNIPVIALCDVDSPVEYVDVVVPC
NNKNKHSVGLIWWMIAREVLRLKGVIPDRQTEWAVMPDLYFYRDPEEPETTAVAEEEVAEEFPAETPAPAEQWDAAAAEA
SNADWAATGDDWDAESAPVAPITAA

GO term prediction

Biological Process

GO:0006412 translation

Molecular Function

GO:0003735 structural constituent of ribosome

Cellular Component

GO:0005622 intracellular
GO:0005840 ribosome
GO:0015935 small ribosomal subunit