Protein
MCA_00736_1
Length
196 amino acids
Gene name: SSU72
Description: RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Browser: contigA:2301576-2302167-
RNA-seq: read pairs 243, FPKM 15.2, percentile rank 34.6% (100% = highest expression)
Protein function
| Annotation: | SSU72 | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 | |
|---|---|---|---|
| KEGG: | K15544 | SSU72 | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] |
| EGGNOG: | 0PFTI | SSU72 | Processively dephosphorylates Ser-5 of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (rpb1) (By similarity) |
| SGD closest match: | S000005166 | SSU72 | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 |
| CGD closest match: | CAL0000174970 | SSU72 | RNA polymerase II subunit A C-terminal domain phosphatase |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_05450_1 | 76.02% | 196 | 1e-116 | MIA_05450_1 |
| SSU72_YARLI | 71.88% | 192 | 4e-105 | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SSU72 PE=3 SV=1 |
| A0A1E3PHG7_9ASCO | 70.83% | 192 | 2e-103 | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51459 PE=4 SV=1 |
| A0A0J9XGH9_GEOCN | 63.73% | 193 | 1e-93 | Similar to Saccharomyces cerevisiae YNL222W SSU72 Transcription/RNA-processing factor that associates with TFIIB and cleavage/polyadenylation factor Pta1p OS=Geotrichum candidum GN=BN980_GECA15s01165g PE=4 SV=1 |
| A0A060SZU2_BLAAD | 65.80% | 193 | 2e-93 | ARAD1C06688p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C06688g PE=4 SV=1 |
| SSU72_YEAST | 60.50% | 200 | 3e-88 | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSU72 PE=1 SV=1 |
| UniRef50_P53538 | 60.50% | 200 | 8e-85 | RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=74 Tax=Ascomycota TaxID=4890 RepID=SSU72_YEAST |
| A0A1E4TBQ6_9ASCO | 63.64% | 176 | 3e-85 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_32511 PE=4 SV=1 |
| Q59UG2_CANAL | 47.98% | 223 | 2e-67 | RNA polymerase II subunit A C-terminal domain phosphatase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SSU72 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.2004
Protein family membership
- RNA polymerase II subunit A (IPR006811)
Domains and repeats
None predicted.
Detailed signature matches
Protein sequence
>MCA_00736_1 MSNKSSIKFCTVCASNQNRSMEAHKVLKEDGFQVCSYGTGSAVRLPGPAMNKPNIYSFGTPYDSMYKELSAKDPRLYTSN GVLTMLDRNRKIKDHPERWVEHKNVFDVVFTCEERCFDAVCYDLMNRGATLNKIVHVINIEIKDNHEEAQVGAQGILDLA RRMAQAEDLDTEIMHILADWQKTHKKLPSLYAPAYF
GO term prediction
Biological Process
GO:0006397 mRNA processing
Molecular Function
GO:0004721 phosphoprotein phosphatase activity
Cellular Component
GO:0005634 nucleus