Protein

MCA_00684_1

Length
403 amino acids

Gene name: RAD23

Description: UV excision repair protein RAD23

Browser: contigA:2125757-2127206-

RNA-seq: read pairs 6742, FPKM 206.2, percentile rank 88.4% (100% = highest expression)

Protein function

Annotation:RAD23UV excision repair protein RAD23
KEGG:K10839RAD23 UV excision repair protein RAD23
EGGNOG:0PIGAFG06767.1UV excision repair protein
SGD closest match:S000000763RAD23UV excision repair protein RAD23
CGD closest match:CAL0000183158RAD23Rad23p

Protein alignments

%idAln lengthE-value
MIA_01729_149.26%2701e-57MIA_01729_1
A0A0J9X7U4_GEOCN45.29%2761e-53Similar to Saccharomyces cerevisiae YEL037C RAD23 Protein with ubiquitin-like N terminus OS=Geotrichum candidum GN=BN980_GECA04s06049g PE=4 SV=1
A0A060SWZ8_BLAAD51.83%1911e-51ARAD1A04510p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A04510g PE=4 SV=1
UniRef50_A0A139HU1448.94%1883e-38Uncharacterized protein n=1 Tax=Mycosphaerella eumusae TaxID=321146 RepID=A0A139HU14_9PEZI
A0A167FHB2_9ASCO45.32%1399e-30Rad23p OS=Sugiyamaella lignohabitans GN=RAD23 PE=4 SV=1
Q6C8W3_YARLI43.48%1388e-26YALI0D16401p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D16401g PE=4 SV=1
A0A1E3PEU8_9ASCO36.50%1373e-24UV excision repair protein Rad23 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_53141 PE=4 SV=1
A0A1E4TFM1_9ASCO38.46%1304e-22Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_107776 PE=4 SV=1
RAD23_YEAST32.29%1921e-19UV excision repair protein RAD23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1
A0A1D8PGE3_CANAL70.37%544e-18Rad23p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD23 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0720

Protein family membership

Domains and repeats

  1. Domain
1 50 100 150 200 250 300 350 403

Detailed signature matches

  1. Family IPR004806
    UV excision repair protein Rad23
    1. TIGR00601
    2. PR01839 (RAD23PROTEIN)
  2. Domain IPR029071
    Ubiquitin-related domain
    1. SSF54236 (Ubiquitin...)
  3. Domain IPR000626
    Ubiquitin domain
    1. SM00213 (ubq_7)
    2. PF00240 (ubiquitin)
    3. PS50053 (UBIQUITIN_2)
  4. Domain IPR009060
    UBA-like
    1. SSF46934 (UBA-like)
  5. Domain IPR015940
    Ubiquitin-associated domain
    1. SM00165 (uba_6)
    2. PF00627 (UBA)
    3. PS50030 (UBA)
  6. Domain IPR015360
    XPC-binding domain
    1. SSF101238 (XPC-bind...)
    2. PF09280 (XPC-binding)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:1.10.10...
  2. G3DSA:1.10.8.10
  3. G3DSA:3.10.20.90
  4. cd01805 (RAD23_N)
  5. cd14281 (UBA2_Rad23...)
  6. mobidb-lite (disord...)

Residue annotation

  1. charged pocket cd0...
  2. hydrophobic patch ...

Protein sequence

>MCA_00684_1
MKVTLKDFKQKKWEIEIDPTETVRALKEKNGEANGWTVEQQKLIFSGRILQDDNTLESYNLTETGFVVCMVSKAKPASKQ
AKAPESTSAAPVAASTPVQESTPEAPQTSTTATSTSQASEAAQNTTTSEGESVTFNDPSALATGSVRETAIANMIEMGYT
REQAQAAMRAAFNNPDRAVEYLLTGIPEHLQHQQQSQQSSAAAGTTESESAPASSGVSAPASDSVAAAAATTTTGEDSGE
VDLFAAAAAAAEQSNSSENSQGLTDLINSPQFEQIREAIRQQPEMLETYLNQFIASNPRMQQLVSTHPAEFYHLLSEIFG
VDLAEDDGQEGGAAAAALGAGAGGAAGGEDDRRIYVTPEENEAIQRLTDLGFDRNVVIQAYFACDKNEELAANYLFDHGH
EDD

GO term prediction

Biological Process

GO:0006289 nucleotide-excision repair
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process

Molecular Function

GO:0003684 damaged DNA binding
GO:0005515 protein binding

Cellular Component

GO:0005634 nucleus