Protein
MCA_00634_1
Length
887 amino acids
Gene name: SNF5
Description: SWI/SNF chromatin-remodeling complex subunit SNF5
Browser: contigA:1968934-1971598-
RNA-seq: read pairs 1123, FPKM 15.6, percentile rank 35.0% (100% = highest expression)
Protein function
| Annotation: | SNF5 | SWI/SNF chromatin-remodeling complex subunit SNF5 | |
|---|---|---|---|
| KEGG: | K11648 | SMARCB1 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 |
| EGGNOG: | 0PHVG | SNF5 | SWI-SNF complex subunit (Snf5) |
| SGD closest match: | S000000493 | SNF5 | SWI/SNF chromatin-remodeling complex subunit SNF5 |
| CGD closest match: | CAL0000195495 | SNF5 | Snf5p |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01320_1 | 59.38% | 517 | 3e-172 | MIA_01320_1 |
| A0A0J9X3S4_GEOCN | 51.72% | 522 | 3e-144 | Similar to Saccharomyces cerevisiae YBR289W SNF5 Subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation OS=Geotrichum candidum GN=BN980_GECA02s00593g PE=4 SV=1 |
| UniRef50_A0A0J9X3S4 | 51.72% | 522 | 6e-141 | Similar to Saccharomyces cerevisiae YBR289W SNF5 Subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X3S4_GEOCN |
| A0A060T6D0_BLAAD | 50.92% | 381 | 4e-104 | ARAD1C18546p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C18546g PE=4 SV=1 |
| Q6C625_YARLI | 50.13% | 377 | 4e-100 | YALI0E13101p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E13101g PE=4 SV=1 |
| A0A1E3PIX0_9ASCO | 39.93% | 551 | 2e-90 | SNF5-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52420 PE=4 SV=1 |
| A0A1E4TFX4_9ASCO | 41.39% | 418 | 5e-77 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_109342 PE=4 SV=1 |
| A0A167C3R9_9ASCO | 71.04% | 183 | 2e-64 | Snf5p OS=Sugiyamaella lignohabitans GN=SNF5 PE=4 SV=1 |
| SNF5_YEAST | 36.63% | 303 | 6e-47 | SWI/SNF chromatin-remodeling complex subunit SNF5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF5 PE=1 SV=3 |
| A0A1D8PJZ6_CANAL | 35.19% | 378 | 3e-46 | Snf5p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SNF5 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1153
Predicted cleavage: 293
Protein family membership
- SNF5/SMARCB1/INI1 (IPR006939)
Domains and repeats
-
Domain
1
100
200
300
400
500
600
700
800
887
Detailed signature matches
-
-
PF04855 (SNF5)
-
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_00634_1 MSFDSSRFSPQYGAFQNNSGNNQQQQPQQQQQQQQQQQQQQQQQQQMSRQTPQFQQHIQQQYMHSPVSSNNMIPQQQQVS QDQLQQQQHFSMSSPNPNVSRLPMGSQTPVMGNQQMPGTPTIPTGMPTGAVAPSPVQSINMNSASHQNSPISVNTPLPQH TPQLQQQSLFMNQYQQQTPQQPQSQQHTPQHTPQQLPQQPQQQQQPIPQQQPQQQQQQPPQQQTSQQQSFQITPGMFTPQ QLQQIQHLQQAQAKGNLTPQQQQQLQMVMANRARAAQAAQAAQAQAQVQARAAAQAQAQAQAAQQAQAQAQQAQLQAAQQ QTQTHAQVPNPLPQAPPQAVPPTPQASAQHTVQAPKINEPEVEEEESTPEEILAVLKQLPPSEDPKEINLTKYIAHDALY EQHFDYVHERFNEIVKRKRTEFQYYNQLLSIRQQSPTSVFPGGYMGYGNGWDNKHEFKMLYPAERKRGGRVTQELNLSQT ALEKIAQKKEVLVPIRLDVEMDKYRLRDTFTWNINDDVVDIQLFASNMLEDYRLPQSLLSNVVSSVSEQLSQFTPHQFVD ISEPKYANSSMYRDEDMRILIKLDITVGQHNLVDQFEWDINCPDNNPEEFAETMCRELNLSGEFVTAIAHSIREQEQLFT KSLSLIQYPFDGTPVEDEDIRREFCLPLGATDYLRGKSHLKEYSPVLFEISEFELDRQDKDRERDSRRKRRQGRAGRRSG PTLPDFRDTLRTFRTPIYSLTLPGGLDRNVELMRQMLEEAAANSANEEANALYGGATGSHAQGSSVGPNGIITSASGYHY LQGRRGRIAAHAANMAIANSSDTQPTHIPKPVGRPPLHRNNSALSSSPRQASLGARYRSATPSENGFIVTLKVPKLRQIL QQRRGFS
GO term prediction
Biological Process
GO:0006338 chromatin remodeling
Molecular Function
GO:0005515 protein binding
Cellular Component
GO:0000228 nuclear chromosome