Protein
MCA_00612_1
Length
1,098 amino acids
Gene name: RDH54
Description: DNA repair and recombination protein RDH54
Browser: contigA:1879803-1883100+
RNA-seq: read pairs 203, FPKM 2.3, percentile rank 12.2% (100% = highest expression)
Protein function
| Annotation: | RDH54 | DNA repair and recombination protein RDH54 | |
|---|---|---|---|
| KEGG: | K10877 | RAD54B | DNA repair and recombination protein RAD54B [EC:3.6.4.-] |
| EGGNOG: | 0PG5P | RDH54 | dna repair and recombination protein |
| SGD closest match: | S000000277 | RDH54 | DNA repair and recombination protein RDH54 |
| CGD closest match: | CAL0000199325 | RDH54 | DNA-dependent ATPase |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01379_1 | 58.39% | 870 | 0.0 | MIA_01379_1 |
| A0A0J9XBQ3_GEOCN | 54.46% | 885 | 0.0 | Similar to Saccharomyces cerevisiae YBR073W RDH54 DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA OS=Geotrichum candidum GN=BN980_GECA08s03167g PE=4 SV=1 |
| UniRef50_A0A0J9XBQ3 | 54.46% | 885 | 0.0 | Similar to Saccharomyces cerevisiae YBR073W RDH54 DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XBQ3_GEOCN |
| A0A1E3PNU9_9ASCO | 52.12% | 756 | 0.0 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49534 PE=4 SV=1 |
| A0A167FD72_9ASCO | 53.91% | 729 | 0.0 | DNA-dependent ATPase RDH54 OS=Sugiyamaella lignohabitans GN=RDH54 PE=4 SV=1 |
| A0A060T1Y1_BLAAD | 43.82% | 744 | 0.0 | ARAD1C24750p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C24750g PE=4 SV=1 |
| Q6C4R0_YARLI | 42.00% | 800 | 1e-171 | YALI0E24431p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E24431g PE=4 SV=1 |
| A0A1E4TCU5_9ASCO | 41.45% | 743 | 1e-159 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_13489 PE=4 SV=1 |
| Q5A5N2_CANAL | 39.16% | 789 | 2e-150 | DNA-dependent ATPase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RDH54 PE=4 SV=1 |
| RDH54_YEAST | 38.31% | 838 | 1e-146 | DNA repair and recombination protein RDH54 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RDH54 PE=1 SV=4 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.6777
Predicted cleavage: 106
Protein family membership
None predicted.
Domains and repeats
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Domain
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Domain
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Domain
1
100
200
300
400
500
600
700
800
900
1000
1098
Detailed signature matches
no IPR
Unintegrated signatures
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-
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cd00046 (DEXDc)
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cd00079 (HELICc)
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mobidb-lite (disord...)
Residue annotation
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ATP binding site c...
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putative Mg++ bind...
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nucleotide binding...
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ATP-binding site c...
Protein sequence
>MCA_00612_1 MYRRRSAVTNPNVNAPFKPLVPSRPGSSSSDTGSSSNSANQPAKNNTPSVISSPSIIKPPTQIKRPLSALHQNENNNNLK PTPLTGGIPGISSNSQYRPVGVKRTKPEVASQPFKSALIAKPTTSETQAKSSSGSDKYFEVLWRKVTNKKNKTWDGDGVL IASSDGTLILENSDGKQITKSRSKPFETFDPDYLIKVGFYEAEISGTIDPQVYLSGSNHLAGSNLTKPSAEIKRPPILKN KPPTNDHFTSPLNGTLLAYAKSGASKSSLGASGPRHNPEAPNAIVLPRPSPVPVGKKVIDVVIDPLLAKFLRPHQVEGVR FLYECIMGYRLYNGRGALLADEMGLGKTLMTITLIWTLLKQTPIMGDHPTIKRALIVCPVTLIANWKKEFKKWLGSQRVG VFVADGKADIKNFVNSRVYQVIIVGYERLRTISIDLKKASIDLIVCDEGHRLKSQNNKSAQAILTLPSEKRIILSGTPIQ NDLGEFFSMVDFLNPGILGTYATFKRVFEIPILNSRQPEATPKDIEKGQMRSEELSKLTRMFTLRRTADALDKYLPPKTD MVIFCKAIPKQAELYQKLVDSSSIKKCLGSNDASEHLRAITILKKMCNSPSLLRDSDFDLNNIDLPPTLPYSSGKLRFLI KFLRLLYINTSEKVVIVSGYTQTLDIIEDHLRDENFSSMRLDGSTATSKRQQLVDKFNTTDQKTCFVFLLSSKSGGAGIN LIGASRLFLYDTDWNPSVDLQAMARVHRDGQKRPVFIYRLLLTGTIDEKIYQRQITKQGLADSFMDPTKQDTTEKKKKSG GKSSSKNSAAATSSTSGKSKKSGGSTNTFSMAELQDLFTYYSETPCHTHDLIACDCQTRFQRDSNVASECASPSSQTGDV SKDANTTSENPNALDLELMSSSSEIFSSDDEENGNNKKKNNPNKDTKDNNESDDEDEEMEDEKISNRLGGWTTARDVAQG TAPIPKILQAKSREKMKYLFDYKHYDPKVLLETFGVANNNSSSLSSVSSSIEDKNDLSSKFFNKKSSQEEKGDDDDDDDD VDEDIEEIKNDEEDDEKNIDMEVELGDSILTQLIRDPNSTVSFIFTKSTLVTSDQSDK
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005524 ATP binding
Cellular Component
None predicted.