Protein
MCA_00593_2
Length
332 amino acids
Gene name: SNP1
Description: U1 small nuclear ribonucleoprotein 70 kDa homolog
Browser: contigA:1824601-1825818-
RNA-seq: read pairs 945, FPKM 35.1, percentile rank 57.2% (100% = highest expression)
Protein function
| Annotation: | SNP1 | U1 small nuclear ribonucleoprotein 70 kDa homolog | |
|---|---|---|---|
| KEGG: | K11093 | SNRP70 | U1 small nuclear ribonucleoprotein 70kDa |
| EGGNOG: | 0PMXS | PGUG_01448 | U1 small nuclear ribonucleoprotein |
| SGD closest match: | S000001323 | SNP1 | U1 small nuclear ribonucleoprotein 70 kDa homolog |
| CGD closest match: | CAL0000189398 | orf19.6866 | U1 snRNP complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9XHK0_GEOCN | 61.68% | 214 | 2e-75 | Similar to Saccharomyces cerevisiae YIL061C SNP1 Component of U1 snRNP required for mRNA splicing via spliceosome OS=Geotrichum candidum GN=BN980_GECA16s02694g PE=4 SV=1 |
| A0A1E3PQM1_9ASCO | 57.21% | 208 | 3e-62 | RNA-binding domain-containing protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_8147 PE=4 SV=1 |
| MIA_00937_1 | 65.62% | 160 | 2e-61 | MIA_00937_1 |
| A0A060T9U6_BLAAD | 55.71% | 210 | 2e-56 | ARAD1D17314p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D17314g PE=4 SV=1 |
| UniRef50_Q5AXS7 | 47.76% | 201 | 7e-47 | U1 small nuclear ribonucleoprotein 70 kDa (AFU_orthologue AFUA_5G13480) n=107 Tax=Fungi TaxID=4751 RepID=Q5AXS7_EMENI |
| Q6C6B0_YARLI | 47.14% | 210 | 5e-45 | YALI0E10989p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E10989g PE=4 SV=1 |
| A0A167D5E7_9ASCO | 56.77% | 155 | 2e-38 | Snp1p OS=Sugiyamaella lignohabitans GN=SNP1 PE=4 SV=1 |
| A0A1D8PHF1_CANAL | 34.93% | 209 | 7e-27 | U1 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.6866 PE=4 SV=1 |
| RU17_YEAST | 38.19% | 199 | 9e-26 | U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1 SV=1 |
| A0A1E4TC82_9ASCO | 50.00% | 54 | 9e-12 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_4003 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.7969
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
300
332
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_00593_2 MVYVSRLPSYIAKLFAPRPILPYEPPIDTSPGPKRRTRHISGISQYLEELRKEKENDTYVPTESWLQKQQRANKIKAEEN AKKLAEANEKWDPYNDPQVRGDAFKTIFVARLDYSLTEQDLEKEFSKYGPIEKIRVVRDTESGKSRGYAFIVFERERDLK AVLYAAGAGVSSGGTKITINGKKVLVDVERGRTVKRWKPQRLGGGLGGRNYSKPPSGPHPTGPSGSGGGGGFKGEGFSGG RGSGDRDRRGRGGGDRDRRGQSSRKPEDIGPPGGGFRDRDRGGARDSRDRRDRDRRDRDRDRSSRDSGRDSRDRGRRPSY RDRDRSPRRPYY
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
GO:0030619 U1 snRNA binding
Cellular Component
None predicted.