MCA_00569_1
Gene name: PRT1
Description: Eukaryotic translation initiation factor 3 subunit B
Browser: contigA:1758214-1760374+
RNA-seq: read pairs 11047, FPKM 189.6, percentile rank 87.5% (100% = highest expression)
Protein function
| Annotation: | PRT1 | Eukaryotic translation initiation factor 3 subunit B | |
|---|---|---|---|
| KEGG: | K03253 | EIF3B | translation initiation factor 3 subunit B |
| EGGNOG: | 0PGHS | PRT1 | Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity) |
| SGD closest match: | S000005888 | PRT1 | Eukaryotic translation initiation factor 3 subunit B |
| CGD closest match: | CAL0000183631 | PRT1 | Eukaryotic translation initiation factor 3 subunit B |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02854_1 | 62.41% | 689 | 0.0 | MIA_02854_1 |
| A0A0J9XBQ9_GEOCN | 57.77% | 682 | 0.0 | Eukaryotic translation initiation factor 3 subunit B OS=Geotrichum candidum GN=PRT1 PE=3 SV=1 |
| A0A167C0N2_9ASCO | 48.22% | 703 | 0.0 | Eukaryotic translation initiation factor 3 subunit B OS=Sugiyamaella lignohabitans GN=PRT1 PE=3 SV=1 |
| UniRef50_A0A167C0N2 | 48.22% | 703 | 0.0 | Eukaryotic translation initiation factor 3 subunit B n=1 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A167C0N2_9ASCO |
| A0A060T6M9_BLAAD | 46.02% | 691 | 0.0 | Eukaryotic translation initiation factor 3 subunit B OS=Blastobotrys adeninivorans GN=PRT1 PE=3 SV=1 |
| A0A1E3PN29_9ASCO | 46.12% | 683 | 0.0 | Eukaryotic translation initiation factor 3 subunit B OS=Nadsonia fulvescens var. elongata DSM 6958 GN=PRT1 PE=3 SV=1 |
| EIF3B_YARLI | 45.28% | 689 | 0.0 | Eukaryotic translation initiation factor 3 subunit B OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PRT1 PE=3 SV=1 |
| EIF3B_CANAL | 40.43% | 700 | 9e-163 | Eukaryotic translation initiation factor 3 subunit B OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PRT1 PE=3 SV=1 |
| A0A1E4TD39_9ASCO | 38.97% | 721 | 6e-148 | Eukaryotic translation initiation factor 3 subunit B OS=Tortispora caseinolytica NRRL Y-17796 GN=PRT1 PE=3 SV=1 |
| EIF3B_YEAST | 36.95% | 682 | 8e-140 | Eukaryotic translation initiation factor 3 subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRT1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0558
Protein family membership
Domains and repeats
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Domain
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Domain
Detailed signature matches
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PIRSF036424 (Transl...)
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MF_03001 (eIF3b)
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cd12278 (RRM_eIF3B)
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PF08662 (eIF2A)
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no IPR
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SSF82171 (DPP6 N-te...)
Residue annotation
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dimer interface cd...
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polypeptide substr...
Protein sequence
>MCA_00569_1 MTSENLVDIGDGSPIDISDLVRKYSVKMDMGLENFVIVDGIPVAPESKVPLLSKVLTKFFSTAGTIKKDGLYIPTGEGKT LGFAFVEYSTTDEANNAVKEFDGKRFDAKHTFIVNKLADIERYGSDSTIGDSYQQPEKTPFKPREHLRSWLCDPACRDQF FLHVGSKIEVNWFKGPANTQVAGEVKRVESPSKWSPKGTYLATQHVFGVQLNGGESFGIVGQFLHHNVQLFDFSPNEKYL VTFSDIPIGESSENEPDNPKNLFGEKDRGNQVVIWDTRTQLPLRSFRIPPSANGQAAKIVWPIFKWSSNSKYFARVTKDT LSIYSTPSMSLVGKKSVSIPGIVDFSFAPTTIALKNRNRIQGIETPPEELLCYWTPEMGEKAARVSLMTVPTKEVIRTRN LFNVIDCRFHWQDDGKYLCVKVDRHTKNKKNTFTILEFFRLTERDIPVESIELKETVINFAWEPKGSKFILVSRQDSGSQ PVPSGNNSLSFYGLEKKKLAVQSSWKLLKKLDKKTTNSIYWCPAGRFAATSNFGPTSSTPTIEYWDTEYDTDKKEGSENV TGVHLIGSFESYGLVDLQWDPSGRYTAVWTNKGQGDFKILNFHGQLLQEKLTDNLRFLSWRPRPPSPLTEEERAKIISKL DKYSSRFDEEDAMEADIALRELITKRRNQFSQWLEFRKAMTEKLHALSIVTEEERLIEESGTVEEIIEEIIEETEEIVN
GO term prediction
Biological Process
GO:0006413 translational initiation
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003743 translation initiation factor activity
GO:0005515 protein binding
GO:0031369 translation initiation factor binding
Cellular Component
GO:0005852 eukaryotic translation initiation factor 3 complex