Protein
MCA_00540_1
Length
615 amino acids
Gene name: CDC40
Description: Pre-mRNA-processing factor 17
Browser: contigA:1683582-1685489-
RNA-seq: read pairs 1488, FPKM 29.8, percentile rank 52.5% (100% = highest expression)
Protein function
| Annotation: | CDC40 | Pre-mRNA-processing factor 17 | |
|---|---|---|---|
| KEGG: | K12816 | CDC40 | pre-mRNA-processing factor 17 |
| EGGNOG: | 0PFEV | FG01399.1 | splicing factor |
| SGD closest match: | S000002772 | CDC40 | Pre-mRNA-processing factor 17 |
| CGD closest match: | CAL0000174348 | orf19.6347 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03084_1 | 55.48% | 629 | 0.0 | MIA_03084_1 |
| A0A1E3PHZ4_9ASCO | 49.76% | 615 | 0.0 | WD40 repeat-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51634 PE=4 SV=1 |
| A0A167D928_9ASCO | 62.97% | 370 | 1e-170 | Cdc40p OS=Sugiyamaella lignohabitans GN=CDC40 PE=4 SV=1 |
| UniRef50_A0A167D928 | 62.97% | 370 | 4e-167 | Cdc40p n=2 Tax=Trichomonascaceae TaxID=410830 RepID=A0A167D928_9ASCO |
| A0A060T5R6_BLAAD | 49.11% | 564 | 4e-171 | ARAD1C14630p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C14630g PE=4 SV=1 |
| Q6C7K4_YARLI | 48.43% | 543 | 2e-169 | YALI0D27346p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D27346g PE=4 SV=1 |
| A0A1E4TKN0_9ASCO | 46.41% | 446 | 2e-140 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_899 PE=4 SV=1 |
| A0A0J9X9T6_GEOCN | 50.27% | 376 | 9e-120 | Similar to Saccharomyces cerevisiae YDR364C CDC40 Pre-mRNA splicing factor OS=Geotrichum candidum GN=BN980_GECA07s00538g PE=4 SV=1 |
| A0A1D8PFH7_CANAL | 43.94% | 396 | 1e-103 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.6347 PE=4 SV=1 |
| PRP17_YEAST | 41.29% | 373 | 2e-91 | Pre-mRNA-processing factor 17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC40 PE=1 SV=2 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0140
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Repeat
-
Repeat
1
100
200
300
400
500
615
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
-
cd00200 (WD40)
-
mobidb-lite (disord...)
Residue annotation
-
structural tetrad ...
Protein sequence
>MCA_00540_1 MSLVADYDSSSGEEEEQTSNVVSTKTSQALILPSYPKKEESKNNDQSALSQLIEYRKAIRTYDSQAGPANPKEKVSSLSS TQKNLLTGRVEKQIFDATTFNENYQNFKSLGYTVDPTINPDSSTGKYAETTENGLVINDMKSYVKNNGRTISQLLASENS SSSEQKINFKERAKKIKTERSKKGDASKLEGNQAYKGPWASYNESSSSTSEEEEEEPEEYEQEEQEQQQEQQPTKKEKEQ PKEWSEFVGSQEYDYLGRTYMHVPQDLDVNLLKEPGSQECFIPKKRIHTWAGHSGGVNALRFFPNSGHLLLSCGNDMKIK LWDCHHSREHLRTFHGHTKAVKDVSFNNAGTQFLSASYDKSIKLWDTETGKVISRFNQPLGPGSRIGTATANCVRFNPEP DKQTCFLSAMSDRKILQWDTRTPNEIVQTYDHHLGPVNSITFVDNNQRFMTTSDDKSIRVWEWQINVPIKFIADPHQHAM PTVALHPKGKYVACQSMDNRILVFGATDRFRANRKKEFSGHLSAGYPIQVAFSPDGKYLMSGDANGYAYFWDWKTCSLKS KFKASLMSYEDKNSSSKKKDGGSSQGSVITCIAAHPQETSKVATAGKEAAISYWD
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.