Protein

MCA_00356_1

Length
1,243 amino acids

Gene name: RSE1

Description: Pre-mRNA-splicing factor RSE1

Browser: contigA:1127355-1131087+

RNA-seq: read pairs 1530, FPKM 15.2, percentile rank 34.5% (100% = highest expression)

Protein function

Annotation:RSE1Pre-mRNA-splicing factor RSE1
KEGG:K12830SF3B3 splicing factor 3B subunit 3
EGGNOG:0PGD2RSE1Pre-mRNA-splicing factor rse1
SGD closest match:S000004513RSE1Pre-mRNA-splicing factor RSE1
CGD closest match:CAL0000182953RSE1Pre-mRNA-splicing factor RSE1

Protein alignments

%idAln lengthE-value
MIA_01590_161.23%12510.0MIA_01590_1
A0A0J9XF38_GEOCN51.32%12530.0Similar to Saccharomyces cerevisiae YML049C RSE1 Protein involved in pre-mRNA splicing OS=Geotrichum candidum GN=BN980_GECA14s00109g PE=4 SV=1
UniRef50_A0A0J9XF3851.32%12530.0Similar to Saccharomyces cerevisiae YML049C RSE1 Protein involved in pre-mRNA splicing n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XF38_GEOCN
A0A161HHZ2_9ASCO47.95%12930.0Rse1p OS=Sugiyamaella lignohabitans GN=RSE1 PE=4 SV=1
A0A060THS1_BLAAD48.51%12410.0ARAD1D33616p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D33616g PE=4 SV=1
A0A1E3PTE6_9ASCO40.42%12990.0Putative splicing factor 3B subunit 3 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_48752 PE=4 SV=1
A0A1E4TDB4_9ASCO37.12%12310.0Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_32879 PE=4 SV=1
RSE1_CANAL32.91%12730.0Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RSE1 PE=3 SV=1
RSE1_YARLI30.84%12425e-156Pre-mRNA-splicing factor RSE1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RSE1 PE=3 SV=1
RSE1_YEAST28.82%7603e-68Pre-mRNA-splicing factor RSE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSE1 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0410

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 200 400 600 800 1000 1243

Detailed signature matches

  1. Domain IPR015943
    WD40/YVTN repeat-like-containing domain
    1. G3DSA:2.130.1...
  2. Domain IPR017986
    WD40-repeat-containing domain
    1. SSF50978 (WD40 repe...)
  3. Domain IPR004871
    Cleavage/polyadenylation specificity factor, A subunit, C-terminal
    1. PF03178 (CPSF_A)
Unintegrated signatures no IPR
Unintegrated signatures
  1. PF10433 (MMS1_N)
  2. mobidb-lite (disord...)

Protein sequence

>MCA_00356_1
MSKSIEYSNLPPLHLYSVTLQKPTSIVKSILGNFSGTSTQEIVIARGSYLELYQTDKDTEKLELQHSYNFFAIIRAIAPF
RIAGSKQDHIIVTSDSGRIAIVDYNAQTKRFEQIHLETYGKTGVRRVVPGQYLTVDPKGRAALIASVEKNKLVYVLNRDS
QANVTISSPLEAHTSRTIVYDVMSVDVGYENPLFAALEIDYSELELSPEESIEDQIVKKLTYYELDLGLNHVVRKWTTPV
DRHANLMLQVPGSSGDLILPSGVLVATNNYISYFHMDKPELRIPIPLRDTVDPTTAPPTCIVTGVVHNIRGMFFFLVQNE
LGDLFKISIAHEDGDVQSISIQYFDTIPVAISLNILKSGLLFAASESGNHILYRFLTLGDEDDVQVFTSDQFPDIDSIYR
IPHTFTPRALTNLTYVDKILGLQPLTGSQVVNLDATQDIPQIYTIGGQGVTAAFKTLIYGIGVSEFAASELPDSPIGVWT
TKVTDSDKYDKYIVFSFPSKTLVLSVGENIEDVSDSGFLLDVSTLFVQQLGQDSLLQIHENGIRHIKPRAEGTEEGDNIN
EWDPPKGTRIIAACANNFQVAIALTNNTIIYFELDDEGNLNEYEEPQELPSAPLVMSIGKVPEGKVRSFFLAVGCEDSTI
RIFSLDLESTLDPLAIAALTAPPSDILIMSMVDGLSSPNDAFQSTALYLHVGLTNGVYVVAQIDSLTGQLSSTRKRFLGP
KEIKLATVVAKSQESVLAMSTTSWLGYMNGVNFEMNPIIYSPLSFAAGLNNEVVEDGIVATHGNVLRIFSLENVGQKLLE
KPIQLELQPRKFTRNSFSPFFYVAESQYNTKLASKPSASITNGEKTEEENGSKKPEYDPKLLGHPRKAQSWASVIQVVDP
ISQTILDTVRLQDNESAISITSCYFESHDKEYLCVGVVRNFNPEQPKGNPHAENAIYVYDYAKDPRESKKGNNNTAPING
KKLKLLHKTTVNEIPSVMIEFQGRLLVGMGPYLSIFDLGIKQLLRKAEAKLNITTITALDTQGSRIVVGDNRESVTFVVY
KPVPNLLIPFADDVIPRHVTTLRMLDYDTCMCGDKFGNVFVMRCPDAVSKASDEDEYGGFILNQKPYLGGAANKLEMVAH
FYLSDIVTGISRASLAIGGRESAVLSGIQGSLTGLIPFVSRRDGEFMMTLEKLMRTHAPPLSGRHHLIYRGYYAPVKWVV
DGDLCEQFPLLPVSIQEVIAKELERSVKDICKKIDDMRVASVF

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003676 nucleic acid binding
GO:0005515 protein binding

Cellular Component

GO:0005634 nucleus