Protein
MCA_00315_1
Length
281 amino acids
Gene name: MSL1
Description: U2 small nuclear ribonucleoprotein B''
Browser: contigA:960749-961595-
RNA-seq: read pairs 528, FPKM 23.1, percentile rank 45.4% (100% = highest expression)
Protein function
| Annotation: | MSL1 | U2 small nuclear ribonucleoprotein B'' | |
|---|---|---|---|
| EGGNOG: | 0PN5A | MSL1 | Small nuclear ribonucleoprotein |
| SGD closest match: | S000001448 | MSL1 | U2 small nuclear ribonucleoprotein B'' |
| CGD closest match: | CAL0000179488 | orf19.7375 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01643_1 | 47.85% | 163 | 2e-30 | MIA_01643_1 |
| UniRef50_M2S483 | 58.76% | 97 | 5e-28 | Uncharacterized protein n=14 Tax=Pleosporineae TaxID=715340 RepID=M2S483_COCSN |
| A0A060T2J1_BLAAD | 62.63% | 99 | 4e-31 | ARAD1C25674p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C25674g PE=4 SV=1 |
| A0A0J9X4D3_GEOCN | 62.11% | 95 | 1e-29 | Similar to Saccharomyces cerevisiae YIR009W MSL1 U2B component of U2 snRNP OS=Geotrichum candidum GN=BN980_GECA02s04234g PE=4 SV=1 |
| A0A1E3PSW7_9ASCO | 65.71% | 70 | 4e-27 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81341 PE=4 SV=1 |
| Q6C824_YARLI | 50.00% | 94 | 5e-23 | YALI0D23375p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D23375g PE=4 SV=1 |
| A0A1E4TF78_9ASCO | 47.19% | 89 | 2e-16 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_105128 PE=4 SV=1 |
| A0A1D8PKC7_CANAL | 46.15% | 91 | 7e-12 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.7375 PE=4 SV=1 |
| A0A167FI36_9ASCO | 45.65% | 46 | 6e-07 | Mud1p OS=Sugiyamaella lignohabitans GN=MUD1 PE=4 SV=1 |
| MSL1_YEAST | 31.87% | 91 | 5e-07 | U2 small nuclear ribonucleoprotein B'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSL1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1401
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
281
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
cd12246 (RRM1_U1A_like)
-
mobidb-lite (disord...)
Residue annotation
-
RNA binding site c...
Protein sequence
>MCA_00315_1 MPPKTRAKRQTNDSETSSGPSPKRARKTSKNEESENTQDKSASPKRTRSKSGHKEPEPVEENSIVKQEDEEKESIEDTNQ EAKQESNDKQSNSTEISEETAEQQDEEKQPSNNTIASPQIPEKPVSSSRQTHTPKSLPIKQATSSIPLGAPNQTIYINNL NDKVNKNVLRNTLYMLFSPHGHIISIVALKTPKMRGQAHIAFQDVASATLAIRAMQGIELFGKKMRIVYAKSKSNAVAIL DGTFKPLAPGSTTTTTTQQNLWSNSDVKYDENDSDSDMADV
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.