Protein

MCA_00237_1

Length
748 amino acids

Browser: contigA:729910-732157+

RNA-seq: read pairs 3107, FPKM 51.3, percentile rank 66.0% (100% = highest expression)

Protein function

EGGNOG:0QDZFReverse transcriptase (RNA-dependent DNA polymerase)

Protein alignments

%idAln lengthE-value
UniRef50_A0A0J8B2Y031.95%1691e-17Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B2Y0_BETVU
MIA_06416_128.19%1882e-17MIA_06416_1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0569

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 748

Detailed signature matches

  1. Domain IPR012337
    Ribonuclease H-like domain
    1. SSF53098 (Ribonucle...)
    2. G3DSA:3.30.42...
  2. Domain IPR001584
    Integrase, catalytic core
    1. PS50994 (INTEGRASE)
Unintegrated signatures no IPR
Unintegrated signatures
  1. mobidb-lite (disord...)

Protein sequence

>MCA_00237_1
MSLKMSTSFPIITAAEDEISEGSYDSDFSSDYSDIYFSSPSSMTSVPSSSATAMKSQRLTNNSGKTLKLSEFNLKISRPI
SEFISTFQLTIGNHLDTLQSTKTLDTADYLNFTTLKASTDFPQWISQLKKVSLECSNTVGNWFCTFLETNRIRVGRDVTI
DQQDIIKKLFLLTIKCYVLETIENEDALKIVSNFFLQKQEQFYQNFNTLFMAIAKWCFYKKLNQSVLDIAQFVQPRPKSN
SVETYFEECNKFSQYIKYMMEFNSGKYFKTQQLFTPSNENRESNEETNFNFFIPPEENFPINPLFEQFFTMLVLARSNSN
NLVQELDECVKLLPGCESYQFSKLNQNQVLKKHLNTSYQLQDDTELVPSKISKKRFRKHVNHHLPPLSQLNESAANSRTN
NYQHHPFNQPSPFSPHPQQLQYPSQGPPSLHAPSDLEGYSEPTQSWEMLPLESTSTKKCSFKRKDNPIYSFLCCRVFKGN
GCTITGARYSLIISDVGSRFHKTYLMCSRQEAAKCVEMYIEEIDLWASDIHHAARRGSLVTKILTDDIPEFQLDHFQNYL
RNKRIKHYVLNPQTPPENDIIHRLTHMISESTDSILEHANLPVSLFWGHAMLHATYIENRLPCGGSNHSKTPFELVTGEI
PTFERWAPFGCLCLVPGQIPPSAFSSTSSFFTIDEEEDNQETQLHQDMKQLQIGHNQHEQQPSGIPALFLGIDANSSLIN
VLYLHNYSLDTAENVTFKKTTFPGFNGI

GO term prediction

Biological Process

GO:0015074 DNA integration

Molecular Function

GO:0003676 nucleic acid binding

Cellular Component

None predicted.