Protein
MCA_00217_1
Length
210 amino acids
Gene name: SNU23
Description: 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component
Browser: contigA:681999-682632+
RNA-seq: read pairs 331, FPKM 19.4, percentile rank 40.6% (100% = highest expression)
Protein function
| Annotation: | SNU23 | 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component | |
|---|---|---|---|
| KEGG: | K12848 | SNU23 | U4/U6.U5 tri-snRNP component SNU23 |
| EGGNOG: | 0PQ47 | SNU23 | Inherit from opiNOG: Zinc finger matrin-type |
| SGD closest match: | S000002256 | SNU23 | 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01287_1 | 56.90% | 116 | 6e-41 | MIA_01287_1 |
| A0A167CX48_9ASCO | 51.85% | 108 | 2e-29 | Snu23p OS=Sugiyamaella lignohabitans GN=SNU23 PE=4 SV=1 |
| UniRef50_A0A167CX48 | 51.85% | 108 | 5e-26 | Snu23p n=2 Tax=Trichomonascaceae TaxID=410830 RepID=A0A167CX48_9ASCO |
| A0A0J9XEM6_GEOCN | 58.14% | 86 | 5e-28 | Similar to Saccharomyces cerevisiae YDL098C SNU23 Component of U4/U6.U5 snRNP involved in mRNA splicing via spliceosome OS=Geotrichum candidum GN=BN980_GECA12s01682g PE=4 SV=1 |
| Q6C2A9_YARLI | 52.08% | 96 | 5e-28 | YALI0F09361p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F09361g PE=4 SV=1 |
| A0A060T6Q0_BLAAD | 49.45% | 91 | 1e-27 | ARAD1B13794p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13794g PE=4 SV=1 |
| A0A1E3PGP1_9ASCO | 38.79% | 116 | 2e-24 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_42889 PE=4 SV=1 |
| SNU23_YEAST | 54.00% | 50 | 1e-12 | 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNU23 PE=1 SV=1 |
| A0A1E4TEU7_9ASCO | 33.87% | 62 | 4e-08 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2022 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0325
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
120
140
160
180
200
210
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_00217_1 MTDDKPPTTDSQQPEFVSRAPKKIDLYQDLNKVVLVPGSAATGKRGKGVGFYCEACNLTFKDSIEYLDHLGSKQHLYNTT GSADGISQKNSTITVEQIRERLKKLYERKQKQLGENAQEFDLQKRIKEQREKEERERLKKKEAQIARRKKRKEGKLKRKR EEMSGGGDQRDQNNEEGNDDNENINSTNSNNQADDMASMMGFAGFGTTKK
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding
Cellular Component
None predicted.