Protein
MCA_00150_1
Length
264 amino acids
Description: splicing factor 3B subunit 4
Browser: contigA:399644-400439-
RNA-seq: read pairs 602, FPKM 28.1, percentile rank 50.7% (100% = highest expression)
Protein function
| Annotation: | splicing factor 3B subunit 4 | ||
|---|---|---|---|
| KEGG: | K12831 | SF3B4 | splicing factor 3B subunit 4 |
| EGGNOG: | 0PHEN | FG07342.1 | Splicing factor 3B subunit 4 |
| SGD closest match: | S000005846 | HSH49 | Protein HSH49 |
| CGD closest match: | CAL0000197531 | orf19.2261 | U2 snRNP complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_00732_1 | 83.17% | 208 | 2e-127 | MIA_00732_1 |
| A0A0J9X5R5_GEOCN | 67.66% | 201 | 2e-100 | Similar to Saccharomyces cerevisiae YOR319W HSH49 U2-snRNP associated splicing factor with similarity to the mammalian splicing factor SAP49 OS=Geotrichum candidum GN=BN980_GECA03s03684g PE=4 SV=1 |
| UniRef50_M7XYR8 | 64.56% | 206 | 1e-93 | Splicing factor 3B subunit 4 n=18 Tax=Eukaryota TaxID=2759 RepID=M7XYR8_RHOT1 |
| A0A060TBL8_BLAAD | 60.70% | 201 | 8e-94 | ARAD1D28600p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D28600g PE=4 SV=1 |
| A0A1E3PN42_9ASCO | 61.95% | 205 | 3e-89 | RNA-binding domain-containing protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_13040 PE=4 SV=1 |
| Q6C5T3_YARLI | 58.82% | 204 | 1e-88 | YALI0E15356p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E15356g PE=4 SV=1 |
| A0A167C5R8_9ASCO | 57.35% | 211 | 9e-87 | Hsh49p OS=Sugiyamaella lignohabitans GN=HSH49 PE=4 SV=1 |
| A0A1E4TL52_9ASCO | 46.91% | 194 | 1e-65 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_11489 PE=4 SV=1 |
| A0A1D8PHX6_CANAL | 45.54% | 224 | 1e-63 | U2 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2261 PE=4 SV=1 |
| HSH49_YEAST | 34.80% | 204 | 2e-35 | Protein HSH49 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSH49 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.2739
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
264
Detailed signature matches
no IPR
Unintegrated signatures
Protein sequence
>MCA_00150_1 MSSKPLKDTERNQEATVYIGNIDENADEALIYELMLQAGPLVSVHLPKDRINQVHQGFGFAEFLHEKDAEYAALIMNGVR IYGKPLKVNKALLDKQKAIDVGADLYIGNLDPMVDEGMLIDTFKAFGAFVHPPKIARNPDTGESKGYGFISYDSFEASDR ALESMNGQYLMNKPVKINYAFKRDGKGERHGDEAERLLAAQAKKNNYQLPIQQQQQAISLTGPSVHQNVSTQSFNNQSIT AQNFSFTPDTKFRSQTGMYNNYRQ
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.