Protein
MCA_00146_1
Length
488 amino acids
Gene name: TFB2
Description: RNA polymerase II transcription factor B subunit 2
Browser: contigA:388991-390458+
RNA-seq: read pairs 885, FPKM 22.4, percentile rank 44.4% (100% = highest expression)
Protein function
| Annotation: | TFB2 | RNA polymerase II transcription factor B subunit 2 | |
|---|---|---|---|
| KEGG: | K03144 | TFIIH4 | transcription initiation factor TFIIH subunit 4 |
| EGGNOG: | 0PI3C | TFB2 | TFIIH and nucleotide excision repair factor 3 complexes |
| SGD closest match: | S000006043 | TFB2 | RNA polymerase II transcription factor B subunit 2 |
| CGD closest match: | CAL0000192947 | CAALFM_CR05560WA | RNA polymerase II transcription factor B subunit 2 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_00497_1 | 75.92% | 490 | 0.0 | MIA_00497_1 |
| A0A0J9XC01_GEOCN | 72.90% | 487 | 0.0 | RNA polymerase II transcription factor B subunit 2 OS=Geotrichum candidum GN=BN980_GECA09s03519g PE=3 SV=1 |
| UniRef50_A0A0J9XC01 | 72.90% | 487 | 0.0 | RNA polymerase II transcription factor B subunit 2 n=2 Tax=Saccharomycetales TaxID=4892 RepID=A0A0J9XC01_GEOCN |
| A0A060T4X9_BLAAD | 62.66% | 482 | 0.0 | RNA polymerase II transcription factor B subunit 2 OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B06644g PE=3 SV=1 |
| TFB2_YARLI | 60.08% | 486 | 0.0 | RNA polymerase II transcription factor B subunit 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1 |
| A0A167DBC4_9ASCO | 57.94% | 504 | 0.0 | RNA polymerase II transcription factor B subunit 2 OS=Sugiyamaella lignohabitans GN=TFB2 PE=3 SV=1 |
| A0A1E4TIX0_9ASCO | 51.88% | 478 | 3e-172 | RNA polymerase II transcription factor B subunit 2 OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_20913 PE=3 SV=1 |
| Q59M53_CANAL | 50.10% | 515 | 6e-168 | RNA polymerase II transcription factor B subunit 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR05560WA PE=3 SV=1 |
| TFB2_YEAST | 48.26% | 516 | 8e-160 | RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1 SV=1 |
| A0A1E3PCN8_9ASCO | 59.59% | 386 | 4e-147 | RNA polymerase II transcription factor B subunit 2 (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_84617 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0954
Protein family membership
- Transcription factor TFIIH subunit p52/Tfb2 (IPR004598)
Domains and repeats
None predicted.
Detailed signature matches
no IPR
Unintegrated signatures
-
mobidb-lite (disord...)
Protein sequence
>MCA_00146_1 MADLNSSVNEYLEGLPETVLTRLFQSPATCLAIFRLLPKLAKNLVLVMLYRDDPLPLDFVDNFVSNNGARYESEALKKLK GLHVVKERHQMLTLNPTLRQSFKSALTGSDGVNSFGVPCETEDKHKVNIAFLDEHAKTKWQSILHYMVGTENSNVPQEVL LLLQHSGLMEGDDINNMKITNAGFQFLLQDINAQIWTLLLQYLNMSDKLQMDHVDVLNFIFMLGSLELGRDYSLSSLSDT QRHMLDDLRDYGIVYQRKSSSRRFYPTRLATTLTSDASALRSASKTMEIVTASNSSGSTKGDSTSSDSSGNKNLTSTSFS TEVDGFIIIETNFRVYAYTSSPLQIAVLNLFVHLKARFANMVMGNITRESVRVALSNGIKASQIIQYLTVHAHPQMRKTE PILPPTVVDQIKLWQIEMDRVRATEGYLFTNFANANEYNAIVNYAKQLGVVVWESASKGRFFVTKEGNSQVIEFVNRRLV QQRSGATG
GO term prediction
Biological Process
GO:0006289 nucleotide-excision repair
Molecular Function
GO:0004003 ATP-dependent DNA helicase activity
Cellular Component
GO:0000439 core TFIIH complex
GO:0005634 nucleus