MCA_00065_1

Protein

Length

143 amino acids

Gene name: RPB8

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC3

Browser: contigA:161905-162422+

RNA-seq: read pairs 669, FPKM 57.4, percentile rank 68.4% (100% = highest expression)

Protein function

Annotation:		RPB8	DNA-directed RNA polymerases I, II, and III subunit RPABC3
KEGG:	K03016	RPB8	DNA-directed RNA polymerases I, II, and III subunit RPABC3
EGGNOG:	0PMVP	RPB8	DNA-directed RNA polymerases i
SGD closest match:	S000005750	RPB8	DNA-directed RNA polymerases I, II, and III subunit RPABC3
CGD closest match:	CAL0000181508	RPB8	DNA-directed RNA polymerase core subunit

Protein alignments

	%id	Aln length	E-value
MIA_04123_1	88.11%	143	5e-92	MIA_04123_1
A0A0J9X899_GEOCN	78.32%	143	8e-81	Similar to Saccharomyces cerevisiae YOR224C RPB8 RNA polymerase subunit ABC14.55, common to RNA polymerases I, II, and III OS=Geotrichum candidum GN=BN980_GECA04s03167g PE=4 SV=1
A0A060T8N2_BLAAD	74.83%	143	2e-76	ARAD1C38258p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C38258g PE=4 SV=1
A0A1E3PNK5_9ASCO	61.22%	147	2e-61	RNA polymerase subunit ABC14.5 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49455 PE=4 SV=1
RPAB3_YEAST	56.16%	146	4e-54	DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB8 PE=1 SV=1
UniRef50_P20436	56.16%	146	9e-51	DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=73 Tax=Saccharomycetales TaxID=4892 RepID=RPAB3_YEAST
Q59MZ8_CANAL	54.17%	144	9e-52	DNA-directed RNA polymerase core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPB8 PE=4 SV=1
Q6C2A8_YARLI	61.43%	140	3e-51	YALI0F09383p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F09383g PE=4 SV=1
A0A1E4TCC3_9ASCO	48.98%	147	5e-51	Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_32678 PE=4 SV=1
A0A161HJW4_9ASCO	67.29%	107	1e-49	DNA-directed RNA polymerase core subunit RPB8 OS=Sugiyamaella lignohabitans GN=RPB8 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1743

Protein family membership

RNA polymerase, Rpb8 (IPR005570)

Domains and repeats

Domain
3 - 143
Nucleic acid-binding, OB-fold (IPR012340)

1 20 40 60 80 100 120 143

Detailed signature matches

IPR005570

RNA polymerase, Rpb8
1. SM00658 (rpol8neu)
  
  2 - 143
  
  SMART
  SM00658 (rpol8neu)
2. PF03870 (RNA_pol_Rpb8)
  
  7 - 143
  
  Pfam
  PF03870 (RNA_pol_Rpb8)
3. PIRSF000779 (RPB8)
  
  1 - 143
  
  PIRSF
  PIRSF000779 (RPB8)
IPR012340

Nucleic acid-binding, OB-fold
1. SSF50249 (Nucleic a...)
  
  3 - 143
  
  SUPERFAMILY
  SSF50249 (Nucleic acid-binding proteins)

no IPR

Unintegrated signatures

G3DSA:2.40.50...

1 - 143

GENE3D
G3DSA:2.40.50.140 (G3DSA:2.40.50.140)

Protein sequence

>MCA_00065_1
MATTLFDDIFQVNSVDTARYDRVTRITARSSTDPSVGLTLDVNCELFPLSVGNTVSLAIAQTLSLDGEVKPPTTGWREAK
PGERSLADDYDYVMYGTVYKFEESEGDFISCYISFGGLLMLLKGGYRKLSNLKQENVYLLLRR

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

None predicted.

Cellular Component