Protein
MIA_01389_1
Length
87 amino acids
Browser: contig02:576208-576528+
Protein function
| EGGNOG: | 0PRY6 | Sm | |
|---|---|---|---|
| SGD closest match: | S000002786 | LSM6 | U6 snRNA-associated Sm-like protein LSm6 |
| CGD closest match: | CAL0000192983 | LSM6 | U4/U6-U5 snRNP complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_00632_1 | 60.674% | 89 | 3.13e-34 | MCA_00632_1 |
| A0A0J9X3X0_GEOCN | 60.465% | 86 | 1.08e-31 | Similar to Saccharomyces cerevisiae YDR378C LSM6 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA01s06225g PE=3 SV=1 |
| A0A060T0X3_BLAAD | 66.667% | 63 | 7.22e-26 | Uncharacterized protein OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C16111g PE=4 SV=1 |
| UniRef50_A0A060T0X3 | 66.667% | 63 | 1.78e-22 | Uncharacterized protein n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T0X3_BLAAD |
| A0A1E3PSA4_9ASCO | 54.167% | 72 | 6.36e-24 | LSM-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81180 PE=3 SV=1 |
| A0A1E4TM12_9ASCO | 58.824% | 68 | 1.58e-23 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_21509 PE=3 SV=1 |
| A0A1D8PRP0_CANAL | 52.174% | 69 | 6.88e-23 | U4/U6-U5 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=LSM6 PE=3 SV=1 |
| Q6CEL3_YARLI | 51.471% | 68 | 4.49e-16 | YALI0B14773p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B14773g PE=4 SV=2 |
| LSM6_YEAST | 47.826% | 69 | 6.13e-13 | U6 snRNA-associated Sm-like protein LSm6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM6 PE=1 SV=2 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.2499
Protein family membership
- Sm-like protein Lsm6/SmF (IPR016487)
Domains and repeats
-
Domain
1
10
20
30
40
50
60
70
80
87
Detailed signature matches
-
-
PIRSF006609 (snRNP_SmF)
-
-
-
SSF50182 (Sm-like r...)
-
no IPR
Unintegrated signatures
-
-
cd01726 (LSm6)
Residue annotation
-
hexamer interface ...
-
Sm1 motif cd01726
-
putative RNA bindi...
-
Sm2 motif cd01726
Protein sequence
>MIA_01389_1 MSSSETPASPSQAELVSKQRYDPSSFLHEITGNNVIVKLHSGIEYHGRLQSVDGFMNIALESTKEVINKKEVMDWGDVFL RGHNGKY
GO term prediction
Biological Process
GO:0000398 mRNA splicing, via spliceosome
Molecular Function
None predicted.
Cellular Component
GO:0005732 small nucleolar ribonucleoprotein complex