Protein
MCA_06473_1
Length
140 amino acids
Gene name: RPO26
Description: DNA-directed RNA polymerases I, II, and III subunit RPABC2
Browser: contigD:4347458-4347977+
RNA-seq: read pairs 1344, FPKM 117.8, percentile rank 81.6% (100% = highest expression)
Protein function
| Annotation: | RPO26 | DNA-directed RNA polymerases I, II, and III subunit RPABC2 | |
|---|---|---|---|
| KEGG: | K03014 | RPB6 | DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
| EGGNOG: | 0PQRP | RPB6 | DNA-directed RNA |
| SGD closest match: | S000006391 | RPO26 | DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
| CGD closest match: | CAL0000199338 | RPO26 | DNA-directed RNA polymerase core subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02161_1 | 86.84% | 114 | 5e-65 | MIA_02161_1 |
| A0A0J9XHR7_GEOCN | 80.00% | 115 | 8e-60 | Similar to Saccharomyces cerevisiae YPR187W RPO26 RNA polymerase subunit ABC23, common to RNA polymerases I,II, and III OS=Geotrichum candidum GN=BN980_GECA17s00791g PE=3 SV=1 |
| A0A167E1Y8_9ASCO | 89.13% | 92 | 2e-57 | DNA-directed RNA polymerase core subunit RPB6 OS=Sugiyamaella lignohabitans GN=RPO26 PE=3 SV=1 |
| UniRef50_A0A167E1Y8 | 89.13% | 92 | 6e-54 | DNA-directed RNA polymerase core subunit RPB6 n=62 Tax=Fungi TaxID=4751 RepID=A0A167E1Y8_9ASCO |
| A0A060T211_BLAAD | 83.33% | 102 | 2e-57 | ARAD1C21318p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C21318g PE=3 SV=1 |
| Q59QT0_CANAL | 85.87% | 92 | 1e-55 | DNA-directed RNA polymerase core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPO26 PE=3 SV=1 |
| A0A1E3PG05_9ASCO | 72.17% | 115 | 2e-55 | DNA-directed RNA polymerases I OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52582 PE=3 SV=1 |
| Q6C2U5_YARLI | 70.00% | 110 | 9e-52 | YALI0F05082p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F05082g PE=3 SV=1 |
| RPAB2_YEAST | 65.79% | 114 | 6e-48 | DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPO26 PE=1 SV=1 |
| A0A1E4TM66_9ASCO | 78.82% | 85 | 5e-48 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_21741 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0190
Protein family membership
- RNA polymerase, subunit omega/K/RPB6 (IPR006110)
- Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit (IPR006111)
- DNA-directed RNA polymerase, subunit RPB6 (IPR028363)
- Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit (IPR006111)
Domains and repeats
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Domain
1
20
40
60
80
100
120
140
140
Detailed signature matches
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MF_00192 (RNApol_ar...)
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PIRSF000778 (RpoK/RPB6)
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PIRSF500154 (RPB6)
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PS01111 (RNA_POL_K_...)
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Protein sequence
>MCA_06473_1 MSDGEDAYNDNFENAFEEADEFVDENFDAEGNLTNPEDNKNIVETGAIPRKKSEKELAVPKEERMTTPYMTKYERARVLG TRALQISMNAPVLVDLEGETDPLQIAMKELAQQKLPLIIRRYLPDGSYEDWGCDELILPQ
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
Cellular Component
GO:0005634 nucleus
GO:0005665 DNA-directed RNA polymerase II, core complex