Protein

MCA_06456_1

Length
519 amino acids

Gene name: RRB1

Description: Ribosome assembly protein RRB1

Browser: contigD:4300015-4301575-

RNA-seq: read pairs 1535, FPKM 36.5, percentile rank 58.3% (100% = highest expression)

Protein function

Annotation:RRB1Ribosome assembly protein RRB1
KEGG:K14848RRB1 ribosome assembly protein RRB1
EGGNOG:0PF98RRB1ribosome assembly protein
SGD closest match:S000004738RRB1Ribosome assembly protein RRB1
CGD closest match:CAL0000198380orf19.6355Ribosome biosynthesis protein

Protein alignments

%idAln lengthE-value
MIA_02179_171.54%5270.0MIA_02179_1
A0A0J9X618_GEOCN62.72%5150.0Similar to Saccharomyces cerevisiae YMR131C RRB1 Essential nuclear protein involved in early steps of ribosome biogenesis OS=Geotrichum candidum GN=BN980_GECA03s04190g PE=4 SV=1
A0A167DH94_9ASCO57.98%5260.0Rrb1p OS=Sugiyamaella lignohabitans GN=RRB1 PE=4 SV=1
A0A1E3PR84_9ASCO64.84%4380.0WD40 repeat-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_19291 PE=4 SV=1
A0A1D8PFH2_CANAL52.80%5171e-177Ribosome biosynthesis protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.6355 PE=4 SV=1
A0A060SZN3_BLAAD54.24%5071e-176ARAD1C09592p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C09592g PE=4 SV=1
UniRef50_G3B7L357.08%4311e-173WD40 repeat-like protein n=3 Tax=Saccharomycetales TaxID=4892 RepID=G3B7L3_CANTC
Q6CBR7_YARLI57.53%4385e-174YALI0C16203p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C16203g PE=4 SV=1
RRB1_YEAST52.27%4403e-161Ribosome assembly protein RRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRB1 PE=1 SV=1
A0A1E4TBJ7_9ASCO55.11%4216e-159Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_133821 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1050

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Repeat
1 50 100 150 200 250 300 350 400 450 519

Detailed signature matches

  1. Domain IPR015943
    WD40/YVTN repeat-like-containing domain
    1. G3DSA:2.130.1...
  2. Domain IPR022052
    Histone-binding protein RBBP4, N-terminal
    1. PF12265 (CAF1C_H4-bd)
  3. Domain IPR017986
    WD40-repeat-containing domain
    1. SSF50978 (WD40 repe...)
    2. PS50294 (WD_REPEATS...)
  4. Repeat IPR001680
    WD40 repeat
    1. PF00400 (WD40)
    2. PS50082 (WD_REPEATS_2)
    3. SM00320 (WD40_4)
  5. SITE IPR019775
    WD40 repeat, conserved site
    1. PS00678 (WD_REPEATS_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. mobidb-lite (disord...)

Protein sequence

>MCA_06456_1
MTDKSTPKGKRSIEDSDITDTKAPRLDSTNSPHVKDPENNEDDMEFEDPYGDDYEDSDEEILEAGDDIDEIEDEEKIGEY
VETSQQRAMQTINEDESEASAKPKNTQSIYLPGLSEPLGPDEVMEPDLSSYDMLHTVNVTWPCLSFDILEDNLGDERRSY
PHSAYIVTGTQAQKDRDNEISVMKFSQLSKTLIRDDDDDSDNEDDEHVDPILETKSLPIQSTTNRIRNNPFSRKTGKYLT
ASMAENGSVYLWDLTQQFKSFDTPGTVISKDMKKPIHTITAHGRNEGYALAWSPLITTGSLLTGDVEGKIYLTTQEQSSW
STSKTPFLGHDGSVEEIQWSGSEKTVFASGGSDGCIKVWDIRSKQHKPMLSVTASPSDVNVMTWSLKNTHLLASGHDDGS
WSMWDLRNFSGKSKPTPVASFDFLKQPITSIEFHPTEDSNVAVASEGHTVTLWDLAVEADDEEVKKQLEGDKNLAEIPPQ
LLFVHYQKDAKEVHWHKQIPGALISTGSDGFTIWKSISM

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005515 protein binding

Cellular Component

None predicted.