Protein

MCA_06357_1

Length
324 amino acids

Gene name: MRPL40

Description: 54S ribosomal protein L40, mitochondrial

Browser: contigD:3979894-3980869+

RNA-seq: read pairs 3747, FPKM 142.5, percentile rank 84.3% (100% = highest expression)

Protein function

Annotation:MRPL4054S ribosomal protein L40, mitochondrial
KEGG:K02895RP-L24 large subunit ribosomal protein L24
EGGNOG:0PGR1PGUG_03824mitochondrial 54S ribosomal protein YmL40
SGD closest match:S000006094MRPL4054S ribosomal protein L40, mitochondrial
CGD closest match:CAL0000185339MRPL40Mitochondrial 54S ribosomal protein YmL40

Protein alignments

%idAln lengthE-value
MIA_04446_147.42%3292e-102MIA_04446_1
A0A0J9XJ30_GEOCN49.16%2971e-88Similar to Saccharomyces cerevisiae YPL173W MRPL40 Mitochondrial ribosomal protein of the large subunit OS=Geotrichum candidum GN=BN980_GECA20s00824g PE=4 SV=1
UniRef50_A0A0J9XJ3049.16%2972e-85Similar to Saccharomyces cerevisiae YPL173W MRPL40 Mitochondrial ribosomal protein of the large subunit n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XJ30_GEOCN
A0A060T4Y5_BLAAD35.02%3171e-51ARAD1C06864p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C06864g PE=4 SV=1
A0A167C804_9ASCO36.51%3043e-50Mitochondrial 54S ribosomal protein YmL40 OS=Sugiyamaella lignohabitans GN=MRPL40 PE=4 SV=1
RM40_YEAST31.02%2742e-3854S ribosomal protein L40, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL40 PE=1 SV=2
A0A1E3PD05_9ASCO33.03%2182e-34Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_29028 PE=4 SV=1
Q6CGC1_YARLI30.87%3113e-31YALI0A20526p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A20526g PE=4 SV=1
Q5A6S0_CANAL29.69%2297e-26Mitochondrial 54S ribosomal protein YmL40 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MRPL40 PE=4 SV=1
A0A1E4TFG5_9ASCO29.71%1751e-14Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_17350 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.9786
Predicted cleavage: 41

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 50 100 150 200 250 324

Detailed signature matches

  1. Domain IPR014722
    Ribosomal protein L2 domain 2
    1. G3DSA:2.30.30.30
  2. Domain IPR008991
    Translation protein SH3-like domain
    1. SSF50104 (Translati...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. cd06089 (KOW_RPL26)

Residue annotation

  1. RNA binding site c...

Protein sequence

>MCA_06357_1
MSKTRALNKVSRYAKTMLPHSKQQEILNTQRMIRMSPHFLQVQFPADKVVADSDKIPADKFPYKVGDRVQIVRANKEAPN
EVGRVGKIASLDIGSHSLMVEGLGGTVKTIVPPQAFFEGQTSPIVDFPKSLHISQVRLVASVADEETGREKDVAIHSLKV
DTENKYYDADYNEFLPTRVAKHDESIVIPWPRPEKPLQKSKFATEAELVQERTFFPKTILEPPVPKAALGQIRNEHSRHN
KNKEPITAEDIAKILAPEMPIPKSKREYLEKRAERFGPDGEKVKHKIIEDPELLAKIEEFVGREIEKGLEKRSFEEEKAY
SQYQ

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.