MCA_06306_1

Browser: contigD:3819988-3820309-

RNA-seq: read pairs 15775, FPKM 1821.7, percentile rank 97.7% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0498

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   106 - 106

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   17 - 83

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. SIGNAL_PEPTIDE (Sig...)
   1 - 16

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
4. SIGNAL_PEPTID... (S...)
   12 - 16

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
5. SIGNAL_PEPTID... (S...)
   3 - 11

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
6. SIGNAL_PEPTID... (S...)
   1 - 2

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
7. SignalP-noTM
   1 - 18

   SignalP euk
   SignalP-noTM (SignalP-noTM)
8. TMhelix
   83 - 105

   TMHMM
   TMhelix (TMhelix)
9. TRANSMEMBRANE (Tran...)
   84 - 105

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)

Protein sequence

>MCA_06306_1
MKFSTAAIISSSVALAAAGSNSTNITTVTIPCEITTTIGNTTTTISTVTVTTCPVVSGTAACPKKNETVKPTGVPTTTVV
QGGAMGSFAGVSGVVAGAVAIFAYLL

GO term prediction