Protein
MCA_06228_1
Length
743 amino acids
Browser: contigD:3621493-3623763+
RNA-seq: read pairs 250, FPKM 4.2, percentile rank 16.0% (100% = highest expression)
Protein function
EGGNOG: | 0PGPZ | to reverse transcriptase | |
---|---|---|---|
SGD closest match: | S000007347 | TY3B-G | Transposon Ty3-G Gag-Pol polyprotein |
CGD closest match: | CAL0000175689 | POL93 | Pol93p |
Protein alignments
%id | Aln length | E-value | ||
---|---|---|---|---|
A0A060T683_BLAAD | 42.42% | 712 | 1e-174 | ARAD1B13926p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13926g PE=4 SV=1 |
UniRef50_A0A060T683 | 42.42% | 712 | 4e-171 | ARAD1B13926p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T683_BLAAD |
YG31B_YEAST | 37.11% | 698 | 4e-130 | Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3 |
B5FVH8_YARLI | 33.96% | 695 | 1e-118 | YALI0E14388p2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E14388g2 PE=4 SV=1 |
A0A167D9C8_9ASCO | 29.20% | 661 | 5e-70 | Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_901 PE=4 SV=1 |
A0A1D8PC70_CANAL | 26.09% | 299 | 8e-27 | Pol93p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=POL93 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.8241
Predicted cleavage: 40
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
600
743
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
active site cd09274
-
RNA/DNA hybrid bin...
Protein sequence
>MCA_06228_1 MRRSAQSKNFQYQKTVKECQRFLGMTNYYRKFVPNFSGIAAPLHDFTSEKTKWTETQTQAFETLKEKLIDAPILISPNSK HTYVLTTDASNKNIGATLEQYEGSRLLGVIAYFSRKLKPTEVNYAVRDLEFLAVVDALQHFRPLLLGRHFILRTDHFSLT QLQSQTKPPHGRIARWFDALADYDFTTQYIKGKQNVVADALSRQPSVNAIDTNDATNEEEELMSTPSDDIIRRVRDKLDS DDYFANVIRILNDENDPAHRTISSKYHLDDGLLYFKITPVLDSNQYRLCIPDCSLRADLVAMAHTNGHYGPYRTFLRLAH FYYWPVMFPEVKRIVDHCPDCAYTQPNKKTHGYLQPLQIPQQRWDSISLDFVSGLPEVDGYDMILVVVDRLSKRARFLPT TKTLTGKDCAYLLHREIFKIHGFPLDIVSDRDVRFQELFWKTMHLINGTKNLQSTSFHPETDGQTERVNRVLRALMSSHA VQYGFNWPFHLATLEFSYNSTFQATIRASPFMADLGRVPRNPSFITPPMSFTGKIEAEDFAIITQAILARTRDFIAEAQD KQSLYANKTRTALVLKENDEVLYIDSVNLFTGPYRVVKKIDDNVYEIDLPEYDRSRRNINVSRLKKFEPSEAFPRSPPLN LEAVKARITEISGIVGETDDAYLLQFSNCRPGHIVAVNKQVLNLLSPAEQERIKRNANAMTRNLMTHPDLAKEQFTHNQH LWRNQALSFFNQEQINHMNRDDS
GO term prediction
Biological Process
GO:0015074 DNA integration
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.