Protein

MCA_06228_1

Length
743 amino acids

Browser: contigD:3621493-3623763+

RNA-seq: read pairs 250, FPKM 4.2, percentile rank 16.0% (100% = highest expression)

Protein function

EGGNOG:0PGPZto reverse transcriptase
SGD closest match:S000007347TY3B-GTransposon Ty3-G Gag-Pol polyprotein
CGD closest match:CAL0000175689POL93Pol93p

Protein alignments

%idAln lengthE-value
A0A060T683_BLAAD42.42%7121e-174ARAD1B13926p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13926g PE=4 SV=1
UniRef50_A0A060T68342.42%7124e-171ARAD1B13926p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T683_BLAAD
YG31B_YEAST37.11%6984e-130Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
B5FVH8_YARLI33.96%6951e-118YALI0E14388p2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E14388g2 PE=4 SV=1
A0A167D9C8_9ASCO29.20%6615e-70Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_901 PE=4 SV=1
A0A1D8PC70_CANAL26.09%2998e-27Pol93p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=POL93 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.8241
Predicted cleavage: 40

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 743

Detailed signature matches

  1. Domain IPR012337
    Ribonuclease H-like domain
    1. SSF53098 (Ribonucle...)
    2. G3DSA:3.30.42...
  2. Domain IPR001584
    Integrase, catalytic core
    1. PS50994 (INTEGRASE)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:3.30.70...
  2. SSF56672 (DNA/RNA p...)
  3. cd09274 (RNase_HI_R...)

Residue annotation

  1. active site cd09274
  2. RNA/DNA hybrid bin...

Protein sequence

>MCA_06228_1
MRRSAQSKNFQYQKTVKECQRFLGMTNYYRKFVPNFSGIAAPLHDFTSEKTKWTETQTQAFETLKEKLIDAPILISPNSK
HTYVLTTDASNKNIGATLEQYEGSRLLGVIAYFSRKLKPTEVNYAVRDLEFLAVVDALQHFRPLLLGRHFILRTDHFSLT
QLQSQTKPPHGRIARWFDALADYDFTTQYIKGKQNVVADALSRQPSVNAIDTNDATNEEEELMSTPSDDIIRRVRDKLDS
DDYFANVIRILNDENDPAHRTISSKYHLDDGLLYFKITPVLDSNQYRLCIPDCSLRADLVAMAHTNGHYGPYRTFLRLAH
FYYWPVMFPEVKRIVDHCPDCAYTQPNKKTHGYLQPLQIPQQRWDSISLDFVSGLPEVDGYDMILVVVDRLSKRARFLPT
TKTLTGKDCAYLLHREIFKIHGFPLDIVSDRDVRFQELFWKTMHLINGTKNLQSTSFHPETDGQTERVNRVLRALMSSHA
VQYGFNWPFHLATLEFSYNSTFQATIRASPFMADLGRVPRNPSFITPPMSFTGKIEAEDFAIITQAILARTRDFIAEAQD
KQSLYANKTRTALVLKENDEVLYIDSVNLFTGPYRVVKKIDDNVYEIDLPEYDRSRRNINVSRLKKFEPSEAFPRSPPLN
LEAVKARITEISGIVGETDDAYLLQFSNCRPGHIVAVNKQVLNLLSPAEQERIKRNANAMTRNLMTHPDLAKEQFTHNQH
LWRNQALSFFNQEQINHMNRDDS

GO term prediction

Biological Process

GO:0015074 DNA integration

Molecular Function

GO:0003676 nucleic acid binding

Cellular Component

None predicted.