Protein

MCA_06213_1

Length
276 amino acids

Gene name: RFA2

Description: Replication factor A protein 2

Browser: contigD:3584128-3584959+

RNA-seq: read pairs 1118, FPKM 49.9, percentile rank 65.4% (100% = highest expression)

Protein function

Annotation:RFA2Replication factor A protein 2
KEGG:K10739RFA2 replication factor A2
EGGNOG:0PNZKRFA2replication factor-a protein
SGD closest match:S000005256RFA2Replication factor A protein 2
CGD closest match:CAL0000176295RFA2Rfa2p

Protein alignments

%idAln lengthE-value
MIA_05683_135.61%2783e-37MIA_05683_1
A0A0J9XCF2_GEOCN33.20%2592e-23Similar to Saccharomyces cerevisiae YNL312W RFA2 Subunit of heterotrimeric Replication Protein A (RPA) OS=Geotrichum candidum GN=BN980_GECA09s02573g PE=4 SV=1
UniRef50_A0A0J9XCF233.20%2593e-20Similar to Saccharomyces cerevisiae YNL312W RFA2 Subunit of heterotrimeric Replication Protein A (RPA) n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XCF2_GEOCN
Q59Z33_CANAL26.62%2635e-12Rfa2p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RFA2 PE=4 SV=1
Q6C2Y9_YARLI26.01%2733e-12YALI0F03993p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F03993g PE=4 SV=1
A0A1E3PT05_9ASCO29.39%2791e-11Nucleic acid-binding protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_44647 PE=4 SV=1
A0A167EQW2_9ASCO30.23%1726e-11Rfa2p OS=Sugiyamaella lignohabitans GN=RFA2 PE=4 SV=1
RFA2_YEAST27.11%2737e-09Replication factor A protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFA2 PE=1 SV=1
A0A060TCN6_BLAAD23.98%2462e-08ARAD1D40040p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D40040g PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0038

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 50 100 150 200 250 276

Detailed signature matches

  1. Domain IPR012340
    Nucleic acid-binding, OB-fold
    1. SSF50249 (Nucleic a...)
  2. Domain IPR014892
    Replication protein A, C-terminal
    1. PF08784 (RPA_C)
  3. Domain IPR011991
    Winged helix-turn-helix DNA-binding domain
    1. G3DSA:1.10.10.10
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:2.40.50...
  2. mobidb-lite (disord...)

Protein sequence

>MCA_06213_1
MDFYEGGYLETNDSSQSHNQSGSQDKVNQATKSVRSVTIHQALHSQVLNPADSTLYYDNQPIIHLRLVAVVRWISEKRET
GQQFLLEDGTGSIYGKVYNNTPTDGGASAFDDYQGDQADSSSEEEPVIENEYYSVFGKLSRFNDRTSLVIIAMKRVTDPH
DVVYHQLKAIQEHLRNTLGAPKIEQGNKGVSSNNNAANGNDLFYSHSGSGYQGNGDLSDRILNYLNTKGRMDSNGVHFET
IAHELKEDVQVVLTTLQMLNEKGDIYEPADSHYYPV

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.