Protein

MCA_06128_1

Length
317 amino acids

Gene name: HMO1

Description: High mobility group protein 1; involved in compacting, bending, bridging and looping DNA

Browser: contigD:3317499-3318608-

RNA-seq: read pairs 2606, FPKM 101.3, percentile rank 78.9% (100% = highest expression)

Protein function

Annotation:HMO1High mobility group protein 1; involved in compacting, bending, bridging and looping DNA
EGGNOG:0PHJSHMO1HMG (high mobility group) box
SGD closest match:S000002581HMO1High mobility group protein 1
CGD closest match:CAL0000192851HMO1Transcriptional regulator HMO1

Protein alignments

%idAln lengthE-value
A0A0J9XD70_GEOCN41.98%1626e-27Similar to Saccharomyces cerevisiae YDR174W HMO1 Chromatin associated high mobility group (HMG) family member involved in genome maintenance OS=Geotrichum candidum GN=BN980_GECA10s01550g PE=4 SV=1
UniRef50_A0A0J9XD7041.98%1621e-23Similar to Saccharomyces cerevisiae YDR174W HMO1 Chromatin associated high mobility group (HMG) family member involved in genome maintenance n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XD70_GEOCN
A0A060TDH3_BLAAD34.73%1673e-20ARAD1D06688p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D06688g PE=4 SV=1
HMO1_YEAST31.46%1786e-17High mobility group protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HMO1 PE=1 SV=1
MIA_05075_150.00%668e-16MIA_05075_1
A0A1E3PT24_9ASCO32.35%681e-08Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_63904 PE=4 SV=1
A0A167E928_9ASCO33.33%696e-08Hmo1p OS=Sugiyamaella lignohabitans GN=HMO1 PE=4 SV=1
HMO1_CANAL35.80%1625e-08Transcriptional regulator HMO1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=HMO1 PE=2 SV=1
Q6CG50_YARLI33.85%652e-06YALI0B00858p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B00858g PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1198

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 250 317

Detailed signature matches

  1. Domain IPR009071
    High mobility group box domain
    1. G3DSA:1.10.30.10
    2. SM00398 (hmgende2)
    3. PS50118 (HMG_BOX_2)
    4. PF00505 (HMG_box)
    5. SSF47095 (HMG-box)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. cd01390 (HMGB-UBF_H...)
  3. mobidb-lite (disord...)

Residue annotation

  1. DNA binding site c...

Protein sequence

>MCA_06128_1
MTVEEEAILKQKKDSLVSSLFTLSKAANDAANATIDYYNVILSMGKDLPGGLEKLFNTTGQLALGLNGGLPGAAEPSTPG
KRKRKPNAKKPKPKFDPNAPRKPITSYFLFAADERKKLFNEREEQNLEPLSNNQLTLELARRWNTLTPQEQRPWRDRYAK
ELEIYRQQKKEYEAKKASDEAAAKAKLEAADEEEEEEEEVEEEEETHIKAQPSSDDEDEDDDDDVASVKTAPEQESEDDS
DSDSDSDSDSDSSEDEVAVSRSPSPPPKKSSKSSKRKSMESSADISAVSSTPKGKKTKLESPSKGSSKKSKKDKKKN

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.