Protein

MCA_06096_1

Length
1,224 amino acids


Browser: contigD:3236369-3240044-

RNA-seq: read pairs 5246, FPKM 52.9, percentile rank 66.5% (100% = highest expression)

Protein function

KEGG:K14297NUP98 nuclear pore complex protein Nup98-Nup96
EGGNOG:0PFHYFGSG_08487nucleoporin
SGD closest match:S000004650NUP116Nucleoporin NUP116/NSP116
CGD closest match:CAL0000196266orf19.7433FG-nucleoporin

Protein alignments

%idAln lengthE-value
MIA_03663_147.51%1811e-39MIA_03663_1
A0A0J9X4K2_GEOCN38.34%1938e-37Similar to Saccharomyces cerevisiae YMR047C NUP116 FG-nucleoporin component of central core of the nuclear pore complex (NPC) OS=Geotrichum candidum GN=BN980_GECA02s05730g PE=4 SV=1
UniRef50_A0A0J9X4K238.34%1932e-33Similar to Saccharomyces cerevisiae YMR047C NUP116 FG-nucleoporin component of central core of the nuclear pore complex (NPC) n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X4K2_GEOCN
A0A161HFC8_9ASCO42.37%1774e-35FG-nucleoporin NUP116 OS=Sugiyamaella lignohabitans GN=NUP116 PE=4 SV=1
Q6C029_YARLI29.04%5201e-33YALI0F28281p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F28281g PE=4 SV=1
A0A060SYB1_BLAAD37.36%1821e-30ARAD1A19580p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A19580g PE=4 SV=1
A0A1E3PTA5_9ASCO33.92%1714e-24Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_68720 PE=4 SV=1
A0A1D8PKH4_CANAL35.93%1671e-22FG-nucleoporin OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.7433 PE=4 SV=1
NU116_YEAST33.91%1741e-22Nucleoporin NUP116/NSP116 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP116 PE=1 SV=2

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.2064
Predicted cleavage: 18

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Repeat
1 200 400 600 800 1000 1224

Detailed signature matches

    1. PF04096 (Nucleoporin2)
    2. PS51434 (NUP_C)
    3. SSF82215 (C-termina...)
    1. PF13634 (Nucleopori...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. mobidb-lite (disord...)

Protein sequence

>MCA_06096_1
MFGSNNSGSGGFAFGRSSSTTGSSMFGNNNNTSSSPFGSNTTTTTSPFGASSNNNTSSSPFGNSSGNFGQNTSSSPNNSF
SSFSSPSANTFGSSSTNTAGSLFGSNKPATSSTGFSFGSSTNSTSTNARPNFEPYVEKDATGTTSFQTITAMPAYRNMST
EELRFEDYKNNRKTPSNTSTFGSSTSSPFGAGTSSTTSPFSAFGNNNNTTTTNTSGLFGSNNNNNNTSGSMFGGFGSNAN
NSSSTSSGFGGFGSNNNTSTTSAFGGSGFGSSNNTGSAFGGFSNNNNTTSTGSSLFGNNNSTQNKGFSFGSTSGSAFGAN
TNNTSTGSSLFGNNNNTGSSLFGSNNNSTNTSSPFGGLNNNTNTNTSSGFGFGSSNTGSSPFGANNNSGSAFGMGNNNNN
SGSSLFGANKPAFGSTANTGGSLFGSNNNTNTGSSLFGGANKPAFGSGTTGTSAFGANNNTSTSGGLFGSKPAGGGLFGN
NNTSTTTGGGLFGSNNNTNTSGGLFGNNNNNSTSTGGFGFGANNNNNTTGGGLFGSNNTSTTTNTGGGLFGNNNANKPLL
GNNTSTSLNTGFGSTPKPLFGGTSTTNTNTGGGLFGGLNSNNNTSTGGGLFGNKPASGGLFGNNNTSTTTGGGLFGSNNN
NTTGGGLFGNNNNNNTLGGGLFGNNNNNNSTGGGLFGNNNSLNNNTAANPLLGSVSQGPVGQNMGLGNNQPLVATVDQNP
YGNNPLFQPNNLTISNGTIVSPGPLATPISSTEKPKKHNAVSAFKLSPKPLFSNARKYPTKAQSVVKSGSFSGGSNDSLL
SGPSPAITSSSGDLVEKKLIRAESFGSTTSVNSLPPASPGNTLFGARADEVILSSTAFSPHHSIRRLIIDRNNPSSSAIE
DSPKLLITGGDANDSQDFAANSTTNGNITSNSASSLPNTPTPATLNGSGKIPARQELFSTPAKSPAADNSIFGKSPAGEP
FLNGKAGSTTTSAFGFGGVPNSSPKAEEKTPKKSLFLSQDTSSPEKKQRSEESAEKAAGEQKEEEQQQQQPKEEEEQEEK
IDESKIPDEEYLNEDGYWMSPSAPKLAKLSLHDLRHVKNFTVGRKGFGKIEFLEPVDLTPIISAASKNKKNNSSSGTQNN
NNRFIMDDICGKIVVLMNKSASVYPPEFREGNPPPPPGSELNVRAKVQLENVWPLSRDKKLPIKDFNHPLVRRHIARLKG
LPNMTFVDFTEDGTWIFLADPLTS

GO term prediction

Biological Process

GO:0006810 transport

Molecular Function

None predicted.

Cellular Component

GO:0005643 nuclear pore