Protein

MCA_06063_1

Length
810 amino acids

Gene name: YSH1

Description: Endoribonuclease YSH1

Browser: contigD:3149289-3151907+

RNA-seq: read pairs 1381, FPKM 21.0, percentile rank 42.8% (100% = highest expression)

Protein function

Annotation:YSH1Endoribonuclease YSH1
KEGG:K14403CPSF3 cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
EGGNOG:0PIVAYSH1Component of the cleavage factor I (CF I) involved in pre-mRNA 3'-end processing (By similarity)
SGD closest match:S000004267YSH1Endoribonuclease YSH1
CGD closest match:CAL0000178545YSH1Endoribonuclease YSH1

Protein alignments

%idAln lengthE-value
MIA_04597_170.92%8150.0MIA_04597_1
A0A0J9XAT3_GEOCN66.36%7730.0Similar to Saccharomyces cerevisiae YLR277C YSH1 Putative endoribonuclease OS=Geotrichum candidum GN=BN980_GECA07s03728g PE=4 SV=1
A0A1E3PCZ1_9ASCO60.42%8010.0Endoribonuclease YSH1 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_84413 PE=4 SV=1
A0A060T2H7_BLAAD59.46%7720.0ARAD1C28666p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C28666g PE=4 SV=1
UniRef50_Q6C2Z766.78%5720.0Endoribonuclease YSH1 n=17 Tax=Ascomycota TaxID=4890 RepID=YSH1_YARLI
YSH1_YARLI66.78%5720.0Endoribonuclease YSH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YSH1 PE=3 SV=2
A0A167F2L6_9ASCO60.73%7080.0Ysh1p OS=Sugiyamaella lignohabitans GN=YSH1 PE=4 SV=1
A0A1E4TDQ2_9ASCO50.45%7790.0Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_97122 PE=4 SV=1
YSH1_YEAST50.77%7840.0Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSH1 PE=1 SV=1
YSH1_CANAL49.81%7890.0Endoribonuclease YSH1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YSH1 PE=3 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0087

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 100 200 300 400 500 600 700 810

Detailed signature matches

  1. Domain IPR001279
    Metallo-beta-lactamase
    1. SM00849 (Lactamase_...)
    2. PF00753 (Lactamase_B)
    3. G3DSA:3.60.15.10
    4. SSF56281 (Metallo-h...)
  2. Domain IPR022712
    Beta-Casp domain
    1. PF10996 (Beta-Casp)
    2. SM01027 (Beta_Casp_2)
  3. Domain IPR011108
    Zn-dependent metallo-hydrolase, RNA specificity domain
    1. PF07521 (RMMBL)
  4. Domain IPR021718
    Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
    1. PF11718 (CPSF73-100_C)
    2. SM01098 (CPSF73_100...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. cd16292 (CPSF3-like...)
  2. mobidb-lite (disord...)

Residue annotation

  1. Zn binding site cd...
  2. active site cd16292
  3. Zn binding site cd...
  4. Zn binding site cd...

Protein sequence

>MCA_06063_1
MSVKRPNPDETENKGDLWNFVCLGGGSEVGRSCHIFTYKGKTVMLDAGVHPAYNGMNSLPFYDDYDLSTVDILLISHFHL
DHAASLPYVMERTNFKGRVFMTHPTKAIYRWLLGDFVRVSSAPDSQESLYTEADLSASFDRIETIDYHSTMEVNGIKFTA
YHAGHVLGAAMYLVEIAGVKVLFTGDYSREEDRHLNPAEVPQQKVDVLITESTYGTGIHQQRLEKESRLTSLIHNTVKNG
GRCLLPVFALGRAQEILLILDEYWESHPELEGINIYYASVLAKKCMVVFQTYINMMNDSIRERFRDSRTNPFHFKHIKSI
KNLDRFEDIGPCVMVAAPGMLQNGVSRELLERWAPDSKNALIMTGYSVEGTLAKQILNEPVDIPSIHSTDTKIPRRCVVE
EISFAAHVDYKQNATFIDLINAKHVILVHGETTNMNRLKSALTSKYNSRKGTDAEVTIYNPSNCVEVELYFKSIKVARVV
GEMAQSSLIPISQDFSLTDSSSALTTTSQDLTRSSNASSIMVPANGKVISGVLVEKDFHLSLVTAPDLREYTSLTTSIVT
ERQSIVVNAQADLIRYHLEHMFGNVEVLKDPYDKSVKREDGEEDDEGVAEYKVMDAVKVIHKDNLSTIEWIGNSINDAIA
DAVLGLLISVDSSPASVKLSSKSCGHEHGDVKPEQEETKLLSKLKPSPPPTFDDKVEKVGKILQAQFGSENYFLAEDKKT
ATIKINEMEAVVSFEDFVVQCPSKPLQQRMSHVLERALYTVAPLAAPANISYQSSLPMAQEPIKTEQVSEVNKVEQIKQE
EPSKEIKQES

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.