Protein
MCA_06062_1
Length
472 amino acids
Gene name: SNF12
Description: Transcription regulatory protein SNF12
Browser: contigD:3147103-3148522-
RNA-seq: read pairs 1965, FPKM 51.3, percentile rank 66.0% (100% = highest expression)
Protein function
| Annotation: | SNF12 | Transcription regulatory protein SNF12 | |
|---|---|---|---|
| KEGG: | K11650 | SMARCD | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D |
| EGGNOG: | 0PNDZ | SNF12 | complex, subunit |
| SGD closest match: | S000005306 | SNF12 | Transcription regulatory protein SNF12 |
| CGD closest match: | CAL0000199592 | orf19.2265 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_00774_1 | 63.39% | 407 | 0.0 | MIA_00774_1 |
| A0A1E3PIK7_9ASCO | 47.62% | 399 | 6e-129 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_83280 PE=4 SV=1 |
| UniRef50_A0A1E3PIK7 | 47.62% | 399 | 2e-125 | Uncharacterized protein n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PIK7_9ASCO |
| A0A0J9X9W7_GEOCN | 44.62% | 437 | 1e-112 | Similar to Saccharomyces cerevisiae YCR052W RSC6 Component of the RSC chromatin remodeling complex OS=Geotrichum candidum GN=BN980_GECA06s02617g PE=4 SV=1 |
| Q6C7U2_YARLI | 43.88% | 392 | 2e-110 | YALI0D25344p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D25344g PE=4 SV=1 |
| A0A060T7J5_BLAAD | 39.59% | 442 | 4e-100 | ARAD1C28622p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C28622g PE=4 SV=1 |
| A0A1E4TEW5_9ASCO | 37.47% | 403 | 7e-86 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_103840 PE=4 SV=1 |
| A0A167D270_9ASCO | 47.06% | 272 | 5e-81 | Snf12p OS=Sugiyamaella lignohabitans GN=SNF12 PE=4 SV=1 |
| A0A1D8PHT4_CANAL | 25.05% | 467 | 2e-38 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2265 PE=4 SV=1 |
| SNF12_YEAST | 22.60% | 531 | 4e-32 | Transcription regulatory protein SNF12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF12 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0948
Predicted cleavage: 11
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
50
100
150
200
250
300
350
400
472
Detailed signature matches
no IPR
Unintegrated signatures
-
-
SSF81995 (beta-sand...)
-
mobidb-lite (disord...)
Protein sequence
>MCA_06062_1 MSGRGTRGRPKGSTAYAIQQAHAMQAQAQSQYQQQQQQQQAAAQAAQQQQALVAMHQQQEPNNASGQGPASGDQPNKYKK PTDKRLSPLFDEVLPSAHLYRSLQEIERKIDATIYRKKLDLQDLYARSVRTRETMRIFISNSVSDQPWQVMSDNSFDFDN SGMRPSFNLRIEGRMLNDKEPLDSPNRRPFSSYFSSIAVKFDSLDDPTESLTAAWHDVTSPNERAALISAHQEQRLEFDV LDVRRKGSQPVQATIMLQLKEFPDKYKLSPDLAKLLAIDEEKTPGVVLALWQYIKFHKLQSPEDSKIIFCDAPLRKLFNR DTFSFQDILELVKPHLLARSPIIIPYTVQVTKPNNIGDFAIDIEIEKDHPIKDEMAELLEHWNDNYEEIQAIDDQIALSI QDMNATRLKYEFMKSMAENPSGTVSQWLDSQASDLRLIMNEKGFNEEQVRRSEFYDDETLNQTLHLVLNGKR
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.