MCA_06033_1

Browser: contigD:3074790-3076986-

RNA-seq: read pairs 76, FPKM 1.3, percentile rank 10.0% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0662

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   731 - 731

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   22 - 712

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. SIGNAL_PEPTIDE (Sig...)
   1 - 21

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
4. SIGNAL_PEPTID... (S...)
   17 - 21

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
5. SIGNAL_PEPTID... (S...)
   6 - 16

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
6. SIGNAL_PEPTID... (S...)
   1 - 5

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
7. SignalP-noTM
   1 - 21

   SignalP euk
   SignalP-noTM (SignalP-noTM)
8. TRANSMEMBRANE (Tran...)
   713 - 730

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)

Protein sequence

>MCA_06033_1
MIFKPVTLALTISLSAQSVLATAEAKPKAGDYENCKIVTAAHAPPPRPSCYSGISSITATFPQVISGESRITSGKLLKDS
KEAPCTIVVYPSVTFPSVTTVLPPCKADIKDKRQVTIVPTASAIVTNSTLSTTESGTQIGSSSDGSVIFSSGTPITVITA
DPEETLVTSVVESSSASEEETETETETEIVSSPIASSVETTFVSSITTIPDATKSTVISSTPTTISTVSKPTTRKTITVV
PTRPLPKPTCITGWQNPVRVLPRVTVTRSTVTGNDGVVTFYRGVIFKQKVTVLPRCMTTITIKPPNRPPFKTKCAKASMP
TVIVAPPVTFKETTRTGYNNVVTVRKGTVYPSITRTLRPCTVTVPPPTRPPFQYTCASGKINTVVVARAQTFKPRTFYGR
DQFVTVREGTTYPAITRTLPLCSTTIDPPPRPPFSLRCAPDSLSATVTVEPAVTIPASSMTGFNRVVTIRPGVTYPEVTR
TLSRCTTTLPAPSRPPFQVTCAPSGKGTVVVAPAVTFHPKTVTGKDRLVTVQAGTTYEKLTRTIPVCPKPTGPACSTSKP
VCLDYKIWRAWYQGKWVIYKTCTRYGFIDCKNPDFKYPDHSRYARTTILKNLKPAAAKALVAEGESNSIVNNVLKRVQQR
LGRGIQIVDENTIDWNKVKSTDDIQEVEILKVKPALGQRKQKRSAKAEAEVEVTLEKKENAPSANGSNKINNASIGILTV
LFSLVSFTMLI

GO term prediction