Protein
MCA_05945_1
Length
887 amino acids
Gene name: PAT1
Description: DNA topoisomerase 2-associated protein PAT1
Browser: contigD:2828218-2830882-
RNA-seq: read pairs 5106, FPKM 71.0, percentile rank 73.0% (100% = highest expression)
Protein function
| Annotation: | PAT1 | DNA topoisomerase 2-associated protein PAT1 | |
|---|---|---|---|
| KEGG: | K12617 | PATL1 | DNA topoisomerase 2-associated protein PAT1 |
| EGGNOG: | 0PK3S | FG09663.1 | II associated protein |
| SGD closest match: | S000000673 | PAT1 | DNA topoisomerase 2-associated protein PAT1 |
| CGD closest match: | CAL0000183191 | orf19.3792 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_05129_1 | 59.76% | 589 | 0.0 | MIA_05129_1 |
| A0A0J9XAC2_GEOCN | 50.86% | 580 | 2e-157 | Similar to Saccharomyces cerevisiae YCR077C PAT1 Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor OS=Geotrichum candidum GN=BN980_GECA07s04520g PE=4 SV=1 |
| UniRef50_A0A0J9XAC2 | 50.86% | 580 | 5e-154 | Similar to Saccharomyces cerevisiae YCR077C PAT1 Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XAC2_GEOCN |
| A0A167C1M7_9ASCO | 48.13% | 588 | 3e-138 | Pat1p OS=Sugiyamaella lignohabitans GN=PAT1 PE=4 SV=1 |
| A0A060T7T2_BLAAD | 46.38% | 580 | 3e-129 | ARAD1C30162p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C30162g PE=4 SV=1 |
| Q6C5B3_YARLI | 40.97% | 576 | 2e-108 | YALI0E19514p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E19514g PE=4 SV=1 |
| A0A1E3PPJ8_9ASCO | 37.90% | 599 | 4e-101 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81861 PE=4 SV=1 |
| A0A1D8PM60_CANAL | 38.49% | 265 | 4e-40 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.3792 PE=4 SV=1 |
| PAT1_YEAST | 33.10% | 287 | 1e-34 | DNA topoisomerase 2-associated protein PAT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAT1 PE=1 SV=4 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0257
Protein family membership
- Topoisomerase II-associated protein PAT1 (IPR019167)
Domains and repeats
None predicted.
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_05945_1 MSFFGLDTISTDPSDKKEYDLNDLETYDDLASKLVEENDDLNDETFGDFSVSKDFDFAGQTARVADNYTPPTGVLQQQNV NQTGPSASANVNPTTQAPMQPSLTSMASNQRPSFASVAAGLAPSSSPSSGFGHSPAPSIQQKNFQPIPGLWDSSATGMDQ KAAKAKIPSVEEIEAQMRAAKNQQGQPQPPPGPQKQMYFPQGAGQYPYPQQQQQPQYPVMNSYPMNNQYFPQDPNMVNNN MGYPPPPPQGPQFMQIPLGMQQQAPQQNQMHQFPMNMPMKQQQQQPQPTQQQQQQPFQQPQPNNQASTPFSQVMAEDMAT NDAENMRLLKKSRRIAQQYKYNNLMTAYDKNLVTKIQLNRIVSEDPFNEDFYYVVSSQIQARANPGRNAFAETYLFQRSR GGFYFGGGRSRGRHENPLQRMQQQVQQAVAYAKEHPQKEQISLEGALGKISLGTGKKPRQALVLKKQSADSSASTSTDSD SAATKDASDSTKSTDEKAKNSVSANSSLTLKTAQSATIKIPKNVRSLLIWIEDVYATLLEIESIERSKSNPVPNQPQDGQ QQQPGQIEGKPEGEPNSEANPENAETSLPASDDWDAKLLVQTKKLWAQIQVVTLEFDQQDDDKSDNQNSGSKKITGNPFI EILRHNKGKRLIPRIFRHLSTTERLTVLTRIINHLDTLDVVKNGSYKNGEELKASDRASIELFLQTVLPPIVQLISESEF GVVIGLLEILISSNDVVKVAHTKIGLSILTVLISQAEFISQKEDENAAAGGTASPAGHRKVSQAELTGWKNTFDSLFHSL KGNLASLFPPGDADDSYVWHFLASLALAASLDHQRVIVDEVREKIFGVMAQAKALPPDLGMQAIENLNLFLNVMGLTATT TEIGQMS
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.