Protein
MCA_05852_1
Length
574 amino acids
Gene name: SWD1
Description: COMPASS component SWD1
Browser: contigD:2542133-2543858-
RNA-seq: read pairs 670, FPKM 14.4, percentile rank 33.2% (100% = highest expression)
Protein function
| Annotation: | SWD1 | COMPASS component SWD1 | |
|---|---|---|---|
| KEGG: | K14961 | RBBP5 | COMPASS component SWD1 |
| EGGNOG: | 0PF85 | SWD1 | component swd1 |
| SGD closest match: | S000000064 | SWD1 | COMPASS component SWD1 |
| CGD closest match: | CAL0000179517 | SWD1 | COMPASS subunit protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_00554_1 | 51.54% | 293 | 2e-70 | MIA_00554_1 |
| A0A0J9X3R2_GEOCN | 44.38% | 320 | 3e-53 | Similar to Saccharomyces cerevisiae YAR003W SWD1 Subunit of the COMPASS (Set1C) complex OS=Geotrichum candidum GN=BN980_GECA02s00153g PE=4 SV=1 |
| UniRef50_A0A0J9X3R2 | 44.38% | 320 | 5e-50 | Similar to Saccharomyces cerevisiae YAR003W SWD1 Subunit of the COMPASS (Set1C) complex n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X3R2_GEOCN |
| A0A167DEH8_9ASCO | 45.07% | 284 | 2e-53 | COMPASS subunit protein SWD1 OS=Sugiyamaella lignohabitans GN=SWD1 PE=4 SV=1 |
| A0A1E3PI12_9ASCO | 43.71% | 286 | 9e-51 | WD40 repeat-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51654 PE=4 SV=1 |
| Q6CB07_YARLI | 44.84% | 281 | 1e-48 | YALI0C22858p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C22858g PE=4 SV=1 |
| A0A1E4TC06_9ASCO | 39.64% | 275 | 2e-42 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_137131 PE=4 SV=1 |
| A0A060T5N4_BLAAD | 52.82% | 142 | 2e-41 | ARAD1C13882p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C13882g PE=4 SV=1 |
| Q5A7S8_CANAL | 42.09% | 278 | 9e-41 | COMPASS subunit protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SWD1 PE=4 SV=1 |
| SWD1_YEAST | 35.03% | 177 | 2e-23 | COMPASS component SWD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0815
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Repeat
1
100
200
300
400
500
574
Detailed signature matches
-
-
PS00678 (WD_REPEATS_1)
-
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_05852_1 MNLSLADPFPQEFPDTKSTFLKYGHSTCLQFSSGGDYLASGLIDGRIVIFDFDTYGVLTVLTYGHTRAIQSLSWSNSNRY LLSASRDWKCIIWDLEQTPQTPFRTVNFETPIWSAWFNPVDERQFVASLLDDNAKFVDFRVLEKEEEKDSDKILHLKTEK DEKSTSQKDDPIEGQNRTPQLNGHSNKRKRCENGNQQESIFSKRPIIIDLESYVRSKPVKLAETPDTPQISVETPDTRET TVDPTETSKNNTETPPSPTSTTTKKSKKGKKGKQNSNTNNANKTSAAESQDQQILTCLFSSNGKYIITGTSKGFLNIIPA GSSHVIFSTRLSTSTIKSIKISNSGKFLVTNSVDRIIRFIKLPDMKYPPPKSQILVDYDDDENDEKIQTNLLEDYPEWNL EILHKFQDVVNRWQWNSILISPSSEYILASTYERTSDIYMWETSMGSLVKIYDGPKEDNVDVCWHPTLPVIMAAGLEAGI IDVWSLPPPQRWSALAPDFTEVEENVVYEEAEDEFDHMDQVVHTRPDLDGEQDVDVDVLNFHFMPENDGYIKPPFYIPVT LEVEEEEKSDSDND
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.