Protein

MCA_05750_1

Length
424 amino acids

Description: Retrotransposon Ty3/Gypsy Gag-Pol polyprotein

Browser: contigD:2244219-2245494+

RNA-seq: read pairs 154, FPKM 4.5, percentile rank 16.6% (100% = highest expression)

Protein function

Annotation:Retrotransposon Ty3/Gypsy Gag-Pol polyprotein
EGGNOG:0PGPZto reverse transcriptase
SGD closest match:S000007347TY3B-GTransposon Ty3-G Gag-Pol polyprotein
CGD closest match:CAL0000175689POL93Pol93p

Protein alignments

%idAln lengthE-value
A0A060T683_BLAAD40.53%3809e-87ARAD1B13926p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13926g PE=4 SV=1
UniRef50_A0A060T68340.53%3802e-83ARAD1B13926p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T683_BLAAD
YG31B_YEAST37.96%3533e-61Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
B5FVH8_YARLI32.53%3755e-53YALI0E14388p2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E14388g2 PE=4 SV=1
A0A161HH93_9ASCO28.48%3161e-35Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_4269 PE=4 SV=1
A0A1D8PC70_CANAL25.84%2981e-28Pol93p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=POL93 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.2006

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 250 300 350 424

Detailed signature matches

  1. Domain IPR012337
    Ribonuclease H-like domain
    1. SSF53098 (Ribonucle...)
    2. G3DSA:3.30.42...
  2. Domain IPR001584
    Integrase, catalytic core
    1. PS50994 (INTEGRASE)

Protein sequence

>MCA_05750_1
MFPEVKRIVDHCPDCAYTQPNKKTHGYLQPLQIPQQRWDSISLDFVSGLPEVDGYDMILVVVDRLSKRARFLPTTKTLTG
KDCAYLLHREIFKIHGFPLDIVSDRDVRFQELFWKTMHLINGTKNLQSTSFHPETDGQTERVNRVLRALMSSHAVQYGFN
WPFHLATLEFSYNSTFQATIRASPFMADLGRVPRNPSFITPPMSFTGKIEAEDFAIITQAILARTRDFIAEAQDKQSLYA
NKTRTALVLKENDEVLVRYAYSLAPNSNKYIDSVNLFTGPYRVVKKIDDNVYEIDLPEYDRSRRNINVSRLKKFEPSEAF
PRSPPLNLEAVKARITEISGIVGETDDAYLLQFSNCRPGHIVAVNKQVLNLLSPAEQERIKRNANAMTRNLMTHPDLAKE
QFTHNQHLWRNQALSFLIKNRLTT

GO term prediction

Biological Process

GO:0015074 DNA integration

Molecular Function

GO:0003676 nucleic acid binding

Cellular Component

None predicted.