Protein
MCA_05749_1
Length
627 amino acids
Description: Retrotransposon Ty3/Gypsy Gag-Pol polyprotein
Browser: contigD:2242287-2244191+
RNA-seq: read pairs 197, FPKM 3.9, percentile rank 15.5% (100% = highest expression)
Protein function
| Annotation: | Retrotransposon Ty3/Gypsy Gag-Pol polyprotein | ||
|---|---|---|---|
| EGGNOG: | 0PGPZ | to reverse transcriptase | |
| SGD closest match: | S000003537 | TY3B-I | Transposon Ty3-I Gag-Pol polyprotein |
| CGD closest match: | CAL0000191508 | ORF298 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A060T683_BLAAD | 46.15% | 650 | 1e-179 | ARAD1B13926p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B13926g PE=4 SV=1 |
| UniRef50_A0A060T683 | 46.15% | 650 | 2e-176 | ARAD1B13926p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T683_BLAAD |
| B5FVH8_YARLI | 38.03% | 660 | 4e-142 | YALI0E14388p2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E14388g2 PE=4 SV=1 |
| YI31B_YEAST | 46.36% | 453 | 4e-130 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2 |
| A0A167D9C8_9ASCO | 41.39% | 447 | 1e-100 | Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_901 PE=4 SV=1 |
| A0A1D8PI28_CANAL | 28.98% | 452 | 8e-53 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ORF298 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0598
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
627
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
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putative NTP bindi...
-
putative active si...
-
putative nucleic a...
-
active site cd09274
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RNA/DNA hybrid bin...
Protein sequence
>MCA_05749_1 MILGTPFTAEFADFVDLKSFSVAGVGSVADDPLFVSAIEFERLAKSKENAIGICVLKFDEPVKEPASLEVLPFDASEYKD VLTNDPPTGLPPERDVTHPIDVVPGSTPPYRSYYRLSKAESDYLTEELSKMANTGMIRPSSSPYSAPDGSLRLCVDYRML NNITIKNRYPLPFIEEMLNKVEDARVFSKLDLRSGYHQIRIRPQDIEKTAFSTSTGHWEFLVMPFGLTNAPATFQNFMND IFRPYIDKFVNVYLDDILVFSKTKEEHVQHLKKVLDVLKENKLVANLKKCEFFKTELDFLGYKLDAKGIHITDEKVRAVK EFPIPKTVKECQRFLGMTNYYRKFVPNFSGIAAPLHDFTSEKTKWTETQTQAFETLKEKLIDAPILISPNSKHTYVLTTD ASNKNIGATLEQYEGSRLLGVIAYFSRKLKPTEVNYAVRDLEFLAVVDALQHFRPLLLGRHFILRTDHFSLTQLQSQTKP PHGRIARWFDALADYDFTTQYIKGKQNVVADALSRQPSVNAIDTNDATNEEEELMSTPSDDIIRRVRDKLDSDDYFANVI RILNDENDPAHRTISSKYHLDDGLLYFKITPVLDSNQYRLCIPDCSLRADLVAMAHTNGHYGPYRTF
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.