Protein
MCA_05730_1
Length
679 amino acids
Description: putative structure-specific endonuclease, Slx4-like
Browser: contigD:2189233-2191364-
RNA-seq: read pairs 735, FPKM 13.4, percentile rank 31.5% (100% = highest expression)
Protein function
| Annotation: | putative structure-specific endonuclease, Slx4-like |
|---|
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03539_1 | 30.67% | 313 | 3e-32 | MIA_03539_1 |
| A0A0J9XCP3_GEOCN | 28.62% | 269 | 2e-27 | Uncharacterized protein OS=Geotrichum candidum GN=BN980_GECA09s02914g PE=4 SV=1 |
| UniRef50_A0A0J9XCP3 | 28.62% | 269 | 5e-24 | Uncharacterized protein n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XCP3_GEOCN |
| A0A161HKX8_9ASCO | 27.49% | 171 | 1e-14 | Structure-specific endonuclease subunit OS=Sugiyamaella lignohabitans GN=slx4 PE=4 SV=1 |
| Q6CFP1_YARLI | 28.57% | 84 | 4e-07 | YALI0B05236p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B05236g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0477
Protein family membership
- Structure-specific endonuclease subunit Slx4 (IPR018574)
Domains and repeats
None predicted.
Detailed signature matches
no IPR
Unintegrated signatures
-
mobidb-lite (disord...)
Protein sequence
>MCA_05730_1 MSEKKPKSKAKDINTILTNGARAIKKRKARPQSSSRSLANRFSESNYFKNSVLNKQDVAALIMGKKGKLKSSNLTPEHLK NLNWQHDSQSEQEATAEDEDSSMLLSFSSSRAFSKRRRIRDNVLSCEQAVERVKNSKLYFKYIPMIKEQYEQRLNTDIKD QYLTRFENLWEYASIPPEFNFENIDNDAEDFRLKLSDLKTLHDTDKEYYSEQLIACSTPLIPSLLEDSSPKQEHTEIKVE EIIEKNQHYNSSDSEFDMTGIFEIEDSDDGISEPLFPHLSTQYAESLVSEDVLINTSTTFSTMFFEKSNSPVKVYNDMDD DIIVTSVMESKNSKLQTPPRDNNITSNISKTNTMKDFSAEDIIEIVEIPGTPSPQYDRLSLGLISKDPLSSSSTDTSLSL QQVNNDKLFYQRQKQDFSKLSLKELKKQMDDWGFKPCKSRAENIEILNSCNVYLPLKKPAASLEQDKQSTTIGLSDNINI LGEITNTHTSTSTNKPKKIPRTARQIEALSTGELKNMIDLFGFRPVRSRSEMIERLKECCLKDTGNMPKGSLNSIKRSSI RSGASTPDSIISSPKINSSVSTLVESIDSAGTTQVENDNPSEVVETEDLDGKISRRISEALKTQEYFNDIWVKILTYQPL DLEEFCKFLNTKLTMYLSTKFVREWCDKHGITTTTANNK
GO term prediction
Biological Process
GO:0006260 DNA replication
GO:0006281 DNA repair
Molecular Function
GO:0017108 5'-flap endonuclease activity
Cellular Component
GO:0005634 nucleus
GO:0033557 Slx1-Slx4 complex