Protein
MCA_05682_1
Length
194 amino acids
Gene name: SGN1
Description: RNA-binding protein SGN1
Browser: contigD:2021328-2022000-
RNA-seq: read pairs 1857, FPKM 117.7, percentile rank 81.5% (100% = highest expression)
Protein function
| Annotation: | SGN1 | RNA-binding protein SGN1 | |
|---|---|---|---|
| KEGG: | K14396 | PABPN1 | polyadenylate-binding protein 2 |
| EGGNOG: | 0PPMX | SGN1 | polyadenylate-binding protein 2 |
| SGD closest match: | S000001440 | SGN1 | RNA-binding protein SGN1 |
| CGD closest match: | CAL0000193127 | orf19.7097 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01704_1 | 75.88% | 170 | 1e-84 | MIA_01704_1 |
| A0A167EA68_9ASCO | 71.76% | 131 | 2e-68 | Sgn1p OS=Sugiyamaella lignohabitans GN=SGN1 PE=4 SV=1 |
| UniRef50_D5GP78 | 70.23% | 131 | 7e-61 | Uncharacterized protein n=14 Tax=Fungi TaxID=4751 RepID=D5GP78_TUBMM |
| A0A0J9X2N7_GEOCN | 72.87% | 129 | 4e-64 | Similar to Saccharomyces cerevisiae YIR001C SGN1 Cytoplasmic RNA-binding protein OS=Geotrichum candidum GN=BN980_GECA01s04399g PE=4 SV=1 |
| A0A060T571_BLAAD | 71.88% | 128 | 4e-64 | ARAD1B02002p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B02002g PE=4 SV=1 |
| A0A1E3PT23_9ASCO | 65.94% | 138 | 3e-62 | RNA-binding domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81486 PE=4 SV=1 |
| Q6C5N8_YARLI | 59.52% | 126 | 6e-51 | YALI0E16500p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E16500g PE=4 SV=2 |
| A0A1E4TDE3_9ASCO | 55.04% | 129 | 1e-46 | Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_16723 PE=4 SV=1 |
| A0A1D8PQJ1_CANAL | 49.25% | 134 | 1e-38 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.7097 PE=4 SV=1 |
| SGN1_YEAST | 43.56% | 101 | 7e-25 | RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGN1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0049
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
120
140
160
180
194
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
cd12306 (RRM_II_PABPs)
-
mobidb-lite (disord...)
Protein sequence
>MCA_05682_1 MSEQTENNQPQQEHEMPEATVMEGSTEAKGEEEVELMKRRLNELEVEAERLQAMQAELQKESQDLAAEDKKDIDARSIYV GNVDYGTTPEELQAHFQSCGTINRVTIVVDKYTHHPKGFAYIEFAEPALVAQALVLNESTFRGRPLKIVPKRTNLPSFML RGRGGMRGRGRGGFYTRGGYRGGFRGRGRGMAPY
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003676 nucleic acid binding
Cellular Component
None predicted.