Protein
MCA_05623_1
Length
303 amino acids
Gene name: RPF1
Description: Ribosome production factor 1
Browser: contigD:1822144-1823056+
RNA-seq: read pairs 755, FPKM 30.7, percentile rank 53.3% (100% = highest expression)
Protein function
| Annotation: | RPF1 | Ribosome production factor 1 | |
|---|---|---|---|
| KEGG: | K14846 | RPF1 | ribosome production factor 1 |
| EGGNOG: | 0PI8V | FG05466.1 | factor 1 |
| SGD closest match: | S000001130 | RPF1 | Ribosome production factor 1 |
| CGD closest match: | CAL0000187860 | RPF1 | rRNA-binding ribosome biosynthesis protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_04903_1 | 76.90% | 303 | 7e-178 | MIA_04903_1 |
| A0A0J9X869_GEOCN | 67.33% | 303 | 1e-152 | Similar to Saccharomyces cerevisiae YHR088W RPF1 Nucleolar protein involved in the assembly and export of the large ribosomal subunit OS=Geotrichum candidum GN=BN980_GECA05s04377g PE=4 SV=1 |
| A0A1E3PJ61_9ASCO | 64.33% | 300 | 1e-144 | Putative nucleolar ribosomal biogenesis factor RPF1p OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_83272 PE=4 SV=1 |
| A0A167CXA4_9ASCO | 63.49% | 304 | 6e-142 | Rpf1p OS=Sugiyamaella lignohabitans GN=RPF1 PE=4 SV=1 |
| A0A060T8G3_BLAAD | 62.38% | 303 | 4e-138 | ARAD1D03344p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D03344g PE=4 SV=1 |
| Q6C0V2_YARLI | 64.85% | 293 | 8e-138 | YALI0F21483p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F21483g PE=4 SV=1 |
| UniRef50_Q757V5 | 61.43% | 293 | 7e-132 | AEL093Cp n=31 Tax=Fungi TaxID=4751 RepID=Q757V5_ASHGO |
| RPF1_YEAST | 58.53% | 299 | 1e-128 | Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1 |
| Q5AFD8_CANAL | 56.44% | 303 | 6e-129 | rRNA-binding ribosome biosynthesis protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPF1 PE=4 SV=1 |
| A0A1E4TCN8_9ASCO | 56.23% | 297 | 6e-117 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_4104 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.7104
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
1
50
100
150
200
250
303
Detailed signature matches
-
-
SSF52954 (Class II ...)
-
no IPR
Unintegrated signatures
Protein sequence
>MCA_05623_1 MGRGTADGKVFRIKNKIRREEVVGRYRDVVNKEKHKMRIERARQETKDPALKQARLAKNIPATLDNKRVYDETIGAEVEG EDEFADYFKPAEDEDGKPKPPKVLITTNVGAKKYADKFAEMLQEIIPDSTYIQRKPQFTIKHMTTFCSNRNYTDLIILNE DKKTVNGITFIHLPEGPTFYFSVSSIKYPEKIPGAGKPTSHVPELILNKFSTRLGLTVGRMFQSLFPQQPDFKGRQVVTL HNQRDFIFFRRHRYMFKNEDRVGLQELGPQFTLRLRRLQKGIREEVEWEHRPEMDKDKKKFYL
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.