Protein
MCA_05464_1
Length
690 amino acids
Gene name: CLF1
Description: Pre-mRNA-splicing factor CLF1
Browser: contigD:1387816-1389955+
RNA-seq: read pairs 425, FPKM 7.6, percentile rank 21.7% (100% = highest expression)
Protein function
| Annotation: | CLF1 | Pre-mRNA-splicing factor CLF1 | |
|---|---|---|---|
| KEGG: | K12869 | CRN | crooked neck |
| EGGNOG: | 0PFU9 | CLF1 | Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication (By similarity) |
| SGD closest match: | S000004107 | CLF1 | Pre-mRNA-splicing factor CLF1 |
| CGD closest match: | CAL0000187187 | CLF1 | Pre-mRNA-splicing factor CLF1 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_01819_1 | 74.78% | 670 | 0.0 | MIA_01819_1 |
| A0A161HJ29_9ASCO | 72.11% | 667 | 0.0 | Clf1p OS=Sugiyamaella lignohabitans GN=CLF1 PE=4 SV=1 |
| UniRef50_A0A161HJ29 | 72.11% | 667 | 0.0 | Clf1p n=3 Tax=saccharomyceta TaxID=716545 RepID=A0A161HJ29_9ASCO |
| A0A0J9XJ80_GEOCN | 71.53% | 678 | 0.0 | Similar to Saccharomyces cerevisiae YLR117C CLF1 Member of the NineTeen Complex (NTC) that contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2,U5, and U6 snRNAs OS=Geotrichum candidum GN=BN980_GECA20s01055g PE=4 SV=1 |
| A0A1E3PT36_9ASCO | 62.72% | 684 | 0.0 | Pre-mRNA-splicing factor CLF1 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_63996 PE=4 SV=1 |
| A0A060SZ70_BLAAD | 63.29% | 662 | 0.0 | ARAD1C06072p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C06072g PE=4 SV=1 |
| CLF1_YARLI | 62.99% | 662 | 0.0 | Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CLF1 PE=3 SV=1 |
| A0A1E4TBC5_9ASCO | 42.92% | 678 | 0.0 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_32441 PE=4 SV=1 |
| CLF1_CANAL | 39.91% | 689 | 5e-161 | Pre-mRNA-splicing factor CLF1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CLF1 PE=3 SV=3 |
| CLF1_YEAST | 39.45% | 659 | 6e-157 | Pre-mRNA-splicing factor CLF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CLF1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0613
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Repeat
1
100
200
300
400
500
600
690
Detailed signature matches
no IPR
Unintegrated signatures
Protein sequence
>MCA_05464_1 MSENSRYKVKNKAVAELQISAEQILLEAYERKEQPLVIPEQKITDLEELSEYQGRKRREYEDALRRNRQNFGQWMRYAQW ELDHEEYDRARSIFERALDVDSTNVPLWIRYIKSELKTRNINHARNLLDRAVTILPRIDKLWFTYVQVEETLLNIPGCRQ VFERWMEWRPEPPAWNAYINMEKRYGEYDRARNIFQRFTALYPQPENWIKWAQFEEEFGTAENVREVYTMGVDTLMAAGD EFLDERIFAAWAKWESKQREWERARAIYQFGLQRLSKSKSASLYNSYLSFTKQYGEKDGIEDAILAKRRIKYEDNLKEDP HDYDTWFSYLTLLEESSADPSETRDVYERAIANIPEQKEKRFWRRYIFLWIRYAIYEELTTKDIERTRQIYQQCIKIIPH KNFSFDKIWILYAKFEIRQNNLQKARKILGQGLALSGKPKIYKNYIQIEKDLKEFDRCRILYQKYIEKYPDFPSPWIEFA EMEQMLGDLDRARAIFELAIEQEEMEMPELVWKRYINFETEEEEYDRARALYEKLIELTGHVKVWISYALFEISIPDSNQ QTEDNEEDEEVEIEVSEEAKSRARKIFERAWDYFKKENKSEERVILNESWKDFEAVHGNDSTKEKVEKQTPYMVKKTKRL PDGSYTEYNDYVFPTDNEDKDKSRDFSAFLANAKKWKAAAAAKAPQNTSS
GO term prediction
Biological Process
GO:0006396 RNA processing
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.