Protein

MCA_05409_1

Length
648 amino acids

Gene name: RPC82

Description: DNA-directed RNA polymerase III subunit RPC3

Browser: contigD:1255010-1256957-

RNA-seq: read pairs 1064, FPKM 20.3, percentile rank 41.8% (100% = highest expression)

Protein function

Annotation:RPC82DNA-directed RNA polymerase III subunit RPC3
KEGG:K03023RPC3 DNA-directed RNA polymerase III subunit RPC3
EGGNOG:0PIIHRPC82DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs (By similarity)
SGD closest match:S000006394RPC82DNA-directed RNA polymerase III subunit RPC3
CGD closest match:CAL0000174854RPC82DNA-directed RNA polymerase III subunit RPC3

Protein alignments

%idAln lengthE-value
MIA_03601_155.91%6850.0MIA_03601_1
A0A0J9XAA4_GEOCN45.23%6500.0Similar to Saccharomyces cerevisiae YPR190C RPC82 RNA polymerase III subunit C82 OS=Geotrichum candidum GN=BN980_GECA05s06401g PE=4 SV=1
UniRef50_A0A0J9XAA445.23%6500.0Similar to Saccharomyces cerevisiae YPR190C RPC82 RNA polymerase III subunit C82 n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XAA4_GEOCN
A0A167FAS1_9ASCO38.24%6594e-150Rpc82p OS=Sugiyamaella lignohabitans GN=RPC82 PE=4 SV=1
A0A1E3PI30_9ASCO38.54%6982e-137Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_83087 PE=4 SV=1
A0A060SXJ1_BLAAD34.56%6544e-130ARAD1A09834p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A09834g PE=4 SV=1
RPC3_YARLI35.04%6653e-121DNA-directed RNA polymerase III subunit RPC3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPC82 PE=3 SV=1
RPC3_YEAST23.75%6612e-43DNA-directed RNA polymerase III subunit RPC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC82 PE=1 SV=2
RPC3_CANAL23.09%6542e-40DNA-directed RNA polymerase III subunit RPC3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPC82 PE=3 SV=1
A0A1E4TJL8_9ASCO32.74%2236e-35Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_30227 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.7615

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 100 200 300 400 500 648

Detailed signature matches

  1. Domain IPR011991
    Winged helix-turn-helix DNA-binding domain
    1. G3DSA:1.10.10.10
  2. Domain IPR013197
    RNA polymerase III subunit RPC82-related, helix-turn-helix
    1. PF08221 (HTH_9)
  3. Domain IPR008806
    RNA polymerase III Rpc82, C -terminal
    1. PF05645 (RNA_pol_Rpc82)
Unintegrated signatures no IPR
Unintegrated signatures
  1. mobidb-lite (disord...)

Protein sequence

>MCA_05409_1
MASQQHSDLSRVILRDIYGDLSEKVVGCLLDFGRLTIAQLSTYSSIPIPIIRKALVPLIQNRFVLYWIDPDSPKVCHFYA
NTTQIINTLIIPQILSYITDSFPNSTNKPEIIKNLFAFGHIRVSDYLSGLSSKLEAELDGDSYEVERVKNELSKEMAELI
SLKFLIPLYNFDFFPPDDIYSQIFKTQLAKISKNKSETARQNEATDAAKKEFKTFIGKRDDPKAGLITEEALHEKLASSA
TVNGNGKIPTPSLSANRRVRRNVSLAAPKLVVDPDTILSVNFDKFLVIFRNNELASIAEKTVGKVSALVYRALLKCYEGK
LLRCRQDVSQDSEFQITTMMVINNFDPSIDIKSSIIQPKYNNGPVKRPIDAIEEEDEGIYDESTGSYSNKRQKTSSPFVT
DDPQDGSSLSEFNDSYNSFIVDDADMYSNGSSNTQPQQISASDINKHLELIAASPLKLLVKAGNRGGGEWYVPFDDLRDT
IRQLKYDEIIQNKFGPSAVRILRIIREKGMANEELLARTALLRQNTIYNLTNQLHKFGALSLQEVPRSADRAPTKTIFMW
FHSPKRAYGLVEEYLCQTLTRLLQRVQSERSRHPVLLSKLEREDVKQNEDLYLTTQEKMEIAQLRQAEERLLVQVSRVQS
LCQVFSHY

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity

Cellular Component

None predicted.