MCA_05285_1

Browser: contigD:866898-867708-

RNA-seq: read pairs 50115, FPKM 2293.4, percentile rank 97.9% (100% = highest expression)

Protein alignments

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0264

Protein family membership

None predicted.

Domains and repeats

Detailed signature matches

no IPR

Unintegrated signatures

1. CYTOPLASMIC_D... (C...)
   269 - 269

   PHOBIUS
   CYTOPLASMIC_DOMAIN (Cytoplasmic domain)
2. NON_CYTOPLASM... (N...)
   19 - 247

   PHOBIUS
   NON_CYTOPLASMIC_DOMAIN (Non cytoplasmic domain)
3. PS51257 (PROKAR_LIP...)
   1 - 34

   PROSITE profiles
   PS51257 (PROKAR_LIPOPROTEIN)
4. SIGNAL_PEPTIDE (Sig...)
   1 - 18

   PHOBIUS
   SIGNAL_PEPTIDE (Signal Peptide)
5. SIGNAL_PEPTID... (S...)
   14 - 18

   PHOBIUS
   SIGNAL_PEPTIDE_C_REGION (Signal peptide C-region)
6. SIGNAL_PEPTID... (S...)
   3 - 13

   PHOBIUS
   SIGNAL_PEPTIDE_H_REGION (Signal peptide H-region)
7. SIGNAL_PEPTID... (S...)
   1 - 2

   PHOBIUS
   SIGNAL_PEPTIDE_N_REGION (Signal peptide N-region)
8. SignalP-noTM
   1 - 18

   SignalP euk
   SignalP-noTM (SignalP-noTM)
9. TRANSMEMBRANE (Tran...)
   248 - 268

   PHOBIUS
   TRANSMEMBRANE (Transmembrane region)
10. mobidb-lite (disord...)
    122 - 147

    MobiDB Lite
    mobidb-lite (disorder_prediction)

    168 - 193

    MobiDB Lite
    mobidb-lite (disorder_prediction)

Protein sequence

>MCA_05285_1
MKFSTASIALSIAALVSAAPAIQYSTVLVTITSCADHKCVETTTTTSTPISTPEVVLSSVSSSFVNGTIVTVTEDCSTSS
PAVVTVTEDCSTSSVAVSTTSSEHVPAVTVTEECSECVKTSSTTESKPPVITTASEEKPIESSSSESVPPVTVTEVCTTC
AVPSSISSSVPPAVETSSSEVPVPVPSTPTEEETTSVITHYITSTSSIPVPVPTGFQNHTFPSGNYSTPSNTTHLVPSYT
APLTGGSVHTSVAAGSLLGAVVFVAALVL

GO term prediction