Protein
MCA_05269_1
Length
569 amino acids
Gene name: NMD3
Description: 60S ribosomal export protein NMD3
Browser: contigD:818986-820696-
RNA-seq: read pairs 3080, FPKM 66.8, percentile rank 71.5% (100% = highest expression)
Protein function
| Annotation: | NMD3 | 60S ribosomal export protein NMD3 | |
|---|---|---|---|
| KEGG: | K07562 | NMD3 | nonsense-mediated mRNA decay protein 3 |
| EGGNOG: | 0PFAM | PGUG_04074 | 60S ribosomal export protein NMD3 |
| SGD closest match: | S000001213 | NMD3 | 60S ribosomal export protein NMD3 |
| CGD closest match: | CAL0000185434 | NMD3 | Ribosome-binding protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03104_1 | 59.46% | 560 | 0.0 | MIA_03104_1 |
| A0A0J9XIU3_GEOCN | 56.33% | 545 | 0.0 | Similar to Saccharomyces cerevisiae YHR170W NMD3 Protein involved in nuclear export of the large ribosomal subunit OS=Geotrichum candidum GN=BN980_GECA22s00549g PE=4 SV=1 |
| A0A1E3PUE0_9ASCO | 50.44% | 571 | 8e-172 | NMD3-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49210 PE=4 SV=1 |
| A0A060T5S4_BLAAD | 51.45% | 519 | 1e-171 | ARAD1B09746p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B09746g PE=4 SV=1 |
| A0A167CM61_9ASCO | 49.63% | 538 | 2e-164 | Ribosome-binding protein NMD3 OS=Sugiyamaella lignohabitans GN=NMD3 PE=4 SV=1 |
| UniRef50_A0A167CM61 | 49.63% | 538 | 5e-161 | Ribosome-binding protein NMD3 n=3 Tax=Saccharomycetales TaxID=4892 RepID=A0A167CM61_9ASCO |
| Q6C2G2_YARLI | 49.20% | 500 | 9e-154 | YALI0F08151p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F08151g PE=4 SV=1 |
| Q59PZ4_CANAL | 48.60% | 500 | 1e-151 | Ribosome-binding protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NMD3 PE=4 SV=1 |
| NMD3_YEAST | 47.37% | 513 | 2e-151 | 60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD3 PE=1 SV=3 |
| A0A1E4TGC9_9ASCO | 46.36% | 550 | 2e-148 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_111251 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0087
Protein family membership
- NMD3 (IPR007064)
Domains and repeats
None predicted.
Detailed signature matches
no IPR
Unintegrated signatures
-
mobidb-lite (disord...)
Protein sequence
>MCA_05269_1 MELNVQKELEALGKCEQGIVRFTPQHTAPRILCANCGNSMISNGVAICSDCIRLSVDITKDIQKSGTLTFCKNCGRLLNP PNQWIHAPPESRELLASILKRLRGLSKMRLIDARFIWTEPHSRRLKVKITVEGEAKEYQNTLVQQSFEVEFVENPSQCPA CAKSYTANTWVASIQIRQRVEHKRTIFYLEQLILKHKAHEHTVSIQESKQGLDFFYNDRKHAVKMVDFLQHIIPIRVKRS EEFISQDTHTSKKTYKFTFNVDIVPISRDDLCVLPKQVATSLGFTSNNPGSNTNQVVLCRRIANSIHFIDTTTLKLAELS SANYWRNPFPFLETTKNLTHYMVLDVEPLGVENKAEGNLVLADITIIKLKDTNGRNHDNDEETTGGDIQEYIVRSHLGGI LYPGDTVLGYHLENTNWNNEIWENEVKKESIQSVILVKKYFDKSKNKRKNQKRRRNWKLKRMAVEYNEQADAEFADLEEP KKKGTKVNTKRLQMDSKAERDYEEFLDEIEQDPMLREQVNIFAKKKPAPGEEEEDDDEEDEDDYDDDDSLPEIDIAGLKI DDSDEEDEE
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.